Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 AC146507.2-201ENST00000460608 476 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 RNU6-615P-201ENST00000516065 106 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 IGKV3D-34-201ENST00000522638 302 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 RN7SL753P-201ENST00000581238 290 ntBASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
VPS9D1Q9Y2B5 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 Y_RNA.229-201ENST00000364347 113 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 AL512604.1-201ENST00000404812 257 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 RPS3AP1-201ENST00000413190 320 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 RPL17P36-201ENST00000420302 549 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 DDX39BP1-205ENST00000422507 192 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 ANP32BP2-201ENST00000454525 545 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 AC100832.1-201ENST00000471945 383 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 RNU6-412P-201ENST00000516434 106 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 IGLV3-24-201ENST00000517477 197 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 MIR5571-201ENST00000577998 113 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 MIR7853-201ENST00000584820 132 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 AL356157.2-201ENST00000605122 111 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 AC012640.5-201ENST00000623897 319 ntBASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
VPS9D1Q9Y2B5 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 MIR133A2-201ENST00000347538 102 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 U8.1-201ENST00000362843 134 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 SNORD32A-201ENST00000364805 84 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 Y_RNA.346-201ENST00000365385 112 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 MIR551A-201ENST00000385042 96 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 RNU4-43P-201ENST00000410628 137 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 OR2AT2P-201ENST00000413438 905 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC096649.2-201ENST00000416186 393 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC119751.6-201ENST00000416712 186 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 RPS3P2-201ENST00000421346 701 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 RPL23AP95-201ENST00000426806 265 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC006028.1-201ENST00000438379 402 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC073465.2-201ENST00000440938 498 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC006026.2-201ENST00000457376 180 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AL049874.1-201ENST00000489560 388 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 SNORA43.2-201ENST00000516652 128 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC107016.1-201ENST00000550463 337 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 MIR6133-201ENST00000617057 108 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC127024.6-201ENST00000621598 424 ntBASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
VPS9D1Q9Y2B5 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 RNU6-766P-201ENST00000362478 107 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 Y_RNA.120-201ENST00000363304 110 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 RNA5SP131-201ENST00000365452 119 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 RPL21P17-201ENST00000397467 475 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 OR2AM1P-201ENST00000422137 422 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 AC091390.3-201ENST00000426478 338 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 AC008065.1-201ENST00000428525 348 ntBASIC5.54□□□□□ -1.52
VPS9D1Q9Y2B5 FTH1P6-201ENST00000430768 320 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms