Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL8A1P27658 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL8A1P27658 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL8A1P27658 MIR412-201ENST00000362142 91 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 RNU6-103P-201ENST00000363686 107 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 MIR135A2-201ENST00000384854 100 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 MIR153-2-201ENST00000385225 87 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 MIR134-201ENST00000385258 73 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 BTF3L4P2-201ENST00000392798 346 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL8A1P27658 RPS15AP5-201ENST00000436276 388 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 AC022431.1-201ENST00000450941 438 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.56□□□□□ -1.68
COL8A1P27658 AC092754.1-201ENST00000472975 479 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC4.56□□□□□ -1.68
COL8A1P27658 RPL21P129-201ENST00000491732 478 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 RN7SKP164-201ENST00000516138 266 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 RNU6-143P-201ENST00000516942 93 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 AP001328.1-201ENST00000528550 176 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.56□□□□□ -1.68
COL8A1P27658 NF1P5-201ENST00000588287 448 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 AP000769.2-201ENST00000602344 396 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL8A1P27658 AC068647.2-201ENST00000637380 353 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.56□□□□□ -1.68
COL8A1P27658 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL8A1P27658 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL8A1P27658 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
COL8A1P27658 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL8A1P27658 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL8A1P27658 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
COL8A1P27658 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
COL8A1P27658 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
COL8A1P27658 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL8A1P27658 AC009812.4-201ENST00000569134 1805 ntBASIC4.56□□□□□ -1.68
COL8A1P27658 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
COL8A1P27658 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL8A1P27658 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC4.55□□□□□ -1.68
COL8A1P27658 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
COL8A1P27658 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.55□□□□□ -1.68
COL8A1P27658 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL8A1P27658 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL8A1P27658 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL8A1P27658 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL8A1P27658 RNU6-428P-201ENST00000362942 107 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 Y_RNA.495-201ENST00000384435 112 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 SNORD37.2-201ENST00000391075 66 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 AL160275.2-201ENST00000412010 394 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC4.55□□□□□ -1.68
COL8A1P27658 GNG5P5-201ENST00000420444 220 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 AL121594.1-201ENST00000475906 575 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 RN7SL244P-201ENST00000493405 297 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 RPL31P61-201ENST00000496160 376 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.55□□□□□ -1.68
COL8A1P27658 RNU6-638P-201ENST00000516582 104 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 RN7SKP260-201ENST00000516907 149 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 RNA5SP165-201ENST00000517142 115 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 RNU6-840P-201ENST00000517275 65 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 AC008489.1-201ENST00000524271 483 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 AC100767.1-201ENST00000528178 123 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.55□□□□□ -1.68
COL8A1P27658 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC4.55□□□□□ -1.68
COL8A1P27658 AL391261.3-201ENST00000557194 520 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 AC090877.1-201ENST00000561418 344 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 AL354798.1-201ENST00000622505 329 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 snoZ196.1-201ENST00000625269 89 ntBASIC4.55□□□□□ -1.68
COL8A1P27658 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.55□□□□□ -1.68
COL8A1P27658 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
COL8A1P27658 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
COL8A1P27658 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
COL8A1P27658 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
COL8A1P27658 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
COL8A1P27658 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.54□□□□□ -1.68
COL8A1P27658 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.54□□□□□ -1.68
COL8A1P27658 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.54□□□□□ -1.68
COL8A1P27658 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL8A1P27658 AC112198.2-201ENST00000426589 6996 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4.54□□□□□ -1.68
COL8A1P27658 RNU6-32P-201ENST00000383948 107 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 RNU6-13P-201ENST00000384248 107 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 RNU6-12P-201ENST00000384604 107 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 RNU6-41P-201ENST00000384741 107 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 MIR32-201ENST00000384965 70 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 SNORA12.1-201ENST00000390873 148 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 RNU6-821P-201ENST00000390995 107 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 RNU6-460P-201ENST00000391158 108 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 RNY4P30-201ENST00000410216 95 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 AC092447.6-201ENST00000414578 210 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 NDUFB4P7-201ENST00000423198 363 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 AC138761.5-201ENST00000433967 325 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC4.54□□□□□ -1.68
COL8A1P27658 AC090804.1-201ENST00000448870 490 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 AC092991.1-201ENST00000477176 376 ntBASIC4.54□□□□□ -1.68
COL8A1P27658 RNU2-56P-201ENST00000516826 190 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms