Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
COL9A1P20849 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
COL9A1P20849 AL450326.2-201ENST00000421913 1962 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.56□□□□□ -1.52
COL9A1P20849 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL9A1P20849 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
COL9A1P20849 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.56□□□□□ -1.52
COL9A1P20849 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
COL9A1P20849 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.56□□□□□ -1.52
COL9A1P20849 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL9A1P20849 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.56□□□□□ -1.52
COL9A1P20849 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL9A1P20849 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL9A1P20849 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL9A1P20849 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL9A1P20849 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL9A1P20849 Y_RNA.24-201ENST00000362508 103 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 Y_RNA.116-201ENST00000363292 103 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 SNORD1C-201ENST00000363315 78 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 Y_RNA.393-201ENST00000383936 102 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 MIR483-201ENST00000385070 76 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 MIR526A2-201ENST00000390198 65 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 SNORA75.5-201ENST00000391291 81 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 MIR888-201ENST00000401186 77 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 RN7SKP177-201ENST00000410567 355 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.56□□□□□ -1.52
COL9A1P20849 GEMIN8P3-201ENST00000445417 720 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC5.56□□□□□ -1.52
COL9A1P20849 Y_RNA.651-201ENST00000459380 103 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 RPS29P24-201ENST00000486345 171 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 RNU6-772P-201ENST00000516042 105 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 RNU6-453P-201ENST00000516819 85 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.56□□□□□ -1.52
COL9A1P20849 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.56□□□□□ -1.52
COL9A1P20849 AC005255.1-201ENST00000593748 216 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 AC105254.2-201ENST00000603636 436 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 AL670379.3-201ENST00000605040 251 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 AL133481.2-203ENST00000607558 139 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 AC109583.2-201ENST00000617367 129 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
COL9A1P20849 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.56□□□□□ -1.52
COL9A1P20849 AC022893.2-201ENST00000564832 3296 ntBASIC5.56□□□□□ -1.52
COL9A1P20849 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.56□□□□□ -1.52
COL9A1P20849 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL9A1P20849 MR1-209ENST00000617803 7584 ntTSL 5 BASIC5.56□□□□□ -1.52
COL9A1P20849 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.56□□□□□ -1.52
COL9A1P20849 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
COL9A1P20849 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL9A1P20849 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
COL9A1P20849 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL9A1P20849 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC5.55□□□□□ -1.52
COL9A1P20849 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.55□□□□□ -1.52
COL9A1P20849 AC139713.2-214ENST00000642059 1811 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.55□□□□□ -1.52
COL9A1P20849 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.55□□□□□ -1.52
COL9A1P20849 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL9A1P20849 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL9A1P20849 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL9A1P20849 Y_RNA.521-201ENST00000384560 114 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 RNU6-178P-201ENST00000384631 104 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL9A1P20849 SNORA26.5-201ENST00000391215 123 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.55□□□□□ -1.52
COL9A1P20849 U3.40-201ENST00000408706 208 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 MIR1290-201ENST00000408735 78 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.55□□□□□ -1.52
COL9A1P20849 AC007919.1-201ENST00000429380 217 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC5.55□□□□□ -1.52
COL9A1P20849 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.55□□□□□ -1.52
COL9A1P20849 RPL12P39-201ENST00000455456 496 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 RPS4XP13-201ENST00000483219 789 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 RPL31P61-201ENST00000496160 376 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.55□□□□□ -1.52
COL9A1P20849 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC5.55□□□□□ -1.52
COL9A1P20849 COX6B1P5-201ENST00000509843 249 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL9A1P20849 CYCSP29-201ENST00000533731 318 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC5.55□□□□□ -1.52
COL9A1P20849 AC108081.1-201ENST00000604358 221 ntBASIC5.55□□□□□ -1.52
COL9A1P20849 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
COL9A1P20849 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL9A1P20849 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
COL9A1P20849 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL9A1P20849 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL9A1P20849 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.55□□□□□ -1.52
COL9A1P20849 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL9A1P20849 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL9A1P20849 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL9A1P20849 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.55□□□□□ -1.52
COL9A1P20849 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
COL9A1P20849 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
COL9A1P20849 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL9A1P20849 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL9A1P20849 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL9A1P20849 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL9A1P20849 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL9A1P20849 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL9A1P20849 RNA5SP28-201ENST00000363841 119 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms