Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.39□□□□□ -1.71
COL6A1P12109 RNU7-143P-201ENST00000516781 65 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 COPS8P3-201ENST00000526024 482 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 SNRPGP16-201ENST00000533275 226 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.39□□□□□ -1.71
COL6A1P12109 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A1P12109 SETP7-201ENST00000552169 453 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 AC024619.4-201ENST00000580924 316 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 MIR5583-1-201ENST00000580941 59 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 MIR5187-201ENST00000583479 76 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.39□□□□□ -1.71
COL6A1P12109 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.39□□□□□ -1.71
COL6A1P12109 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.39□□□□□ -1.71
COL6A1P12109 AC006006.1-201ENST00000603082 144 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 AC104662.1-201ENST00000604448 511 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 MIR432-201ENST00000606207 94 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 AL157817.1-201ENST00000614264 790 ntBASIC4.39□□□□□ -1.71
COL6A1P12109 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
COL6A1P12109 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.39□□□□□ -1.71
COL6A1P12109 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A1P12109 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL6A1P12109 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.39□□□□□ -1.71
COL6A1P12109 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.38□□□□□ -1.71
COL6A1P12109 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A1P12109 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
COL6A1P12109 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A1P12109 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A1P12109 Y_RNA.31-201ENST00000362574 102 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 Y_RNA.112-201ENST00000363250 102 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 RNA5SP399-201ENST00000364003 117 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 RNA5SP97-201ENST00000365006 84 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 RNU6-637P-201ENST00000384050 107 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 RNU6-1105P-201ENST00000384774 107 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 RNU6-308P-201ENST00000390957 107 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 UBE2V1P2-201ENST00000397758 440 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 AC114491.1-201ENST00000416095 246 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 RPL7P10-201ENST00000417407 739 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 AL158156.1-201ENST00000422509 473 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 AL358176.2-201ENST00000425769 204 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.38□□□□□ -1.71
COL6A1P12109 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.38□□□□□ -1.71
COL6A1P12109 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.38□□□□□ -1.71
COL6A1P12109 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.38□□□□□ -1.71
COL6A1P12109 AL137792.2-201ENST00000443484 235 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 AC020550.1-201ENST00000447385 163 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 ELOCP24-201ENST00000456370 334 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 AC010469.1-201ENST00000463864 576 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 RPS23P3-201ENST00000470993 430 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.38□□□□□ -1.71
COL6A1P12109 RNU6-189P-201ENST00000516120 101 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 AC009902.1-201ENST00000519351 183 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A1P12109 RANP3-201ENST00000530970 276 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.38□□□□□ -1.71
COL6A1P12109 AC138761.3-201ENST00000579993 334 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC4.38□□□□□ -1.71
COL6A1P12109 AC012669.1-201ENST00000603209 283 ntBASIC4.38□□□□□ -1.71
COL6A1P12109 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A1P12109 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A1P12109 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A1P12109 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A1P12109 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.38□□□□□ -1.71
COL6A1P12109 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.37□□□□□ -1.71
COL6A1P12109 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
COL6A1P12109 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.37□□□□□ -1.71
COL6A1P12109 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A1P12109 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.37□□□□□ -1.71
COL6A1P12109 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A1P12109 RNU6-1309P-201ENST00000363305 108 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 RNU6-1284P-201ENST00000363701 100 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 RNU6-1106P-201ENST00000390845 107 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 RNU6-754P-201ENST00000391166 107 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 SOD2P1-201ENST00000396543 562 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 RPS23P10-201ENST00000416185 486 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AC113618.1-201ENST00000416747 285 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.37□□□□□ -1.71
COL6A1P12109 SNORA71B-202ENST00000439232 272 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 TXNP1-201ENST00000441872 371 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 FTH1P25-201ENST00000447665 469 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AC115115.1-201ENST00000449927 248 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 MRPS31P2-201ENST00000451581 518 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 BX510359.1-201ENST00000456973 237 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 RN7SL432P-201ENST00000484057 298 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.37□□□□□ -1.71
COL6A1P12109 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.37□□□□□ -1.71
COL6A1P12109 HIGD1AP13-201ENST00000509878 289 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AC108078.2-201ENST00000510750 236 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.37□□□□□ -1.71
COL6A1P12109 RNU6-976P-201ENST00000516086 111 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 RNU6-1095P-201ENST00000516148 108 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 RN7SKP57-201ENST00000517248 293 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.37□□□□□ -1.71
COL6A1P12109 DEFB108D-201ENST00000527787 222 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.37□□□□□ -1.71
COL6A1P12109 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.37□□□□□ -1.71
COL6A1P12109 OR11H5P-201ENST00000554039 926 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.37□□□□□ -1.71
COL6A1P12109 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.37□□□□□ -1.71
COL6A1P12109 RPL23AP87-202ENST00000573039 466 ntBASIC4.37□□□□□ -1.71
COL6A1P12109 FAM60BP-201ENST00000578364 658 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms