Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.21□□□□□ -1.9
LDB3O75112 AC009812.4-201ENST00000569134 1805 ntBASIC3.21□□□□□ -1.9
LDB3O75112 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.21□□□□□ -1.9
LDB3O75112 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
LDB3O75112 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LDB3O75112 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
LDB3O75112 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
LDB3O75112 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LDB3O75112 SNORA23-201ENST00000365128 182 ntBASIC3.2□□□□□ -1.9
LDB3O75112 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LDB3O75112 RNU6-1227P-201ENST00000383981 107 ntBASIC3.2□□□□□ -1.9
LDB3O75112 RNU6-76P-201ENST00000384060 104 ntBASIC3.2□□□□□ -1.9
LDB3O75112 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
LDB3O75112 TXNP7-201ENST00000406296 293 ntBASIC3.2□□□□□ -1.9
LDB3O75112 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.2□□□□□ -1.9
LDB3O75112 MTATP6P4-201ENST00000427725 675 ntBASIC3.2□□□□□ -1.9
LDB3O75112 YME1L1P1-201ENST00000429435 297 ntBASIC3.2□□□□□ -1.9
LDB3O75112 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.2□□□□□ -1.9
LDB3O75112 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.2□□□□□ -1.9
LDB3O75112 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.2□□□□□ -1.9
LDB3O75112 MTND3P16-201ENST00000452205 344 ntBASIC3.2□□□□□ -1.9
LDB3O75112 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.2□□□□□ -1.9
LDB3O75112 AL356010.1-201ENST00000456364 102 ntBASIC3.2□□□□□ -1.9
LDB3O75112 RPS29P15-201ENST00000458329 171 ntBASIC3.2□□□□□ -1.9
LDB3O75112 SNORD97-201ENST00000459187 142 ntBASIC3.2□□□□□ -1.9
LDB3O75112 RPL21P10-201ENST00000463521 490 ntBASIC3.2□□□□□ -1.9
LDB3O75112 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.2□□□□□ -1.9
LDB3O75112 AL163973.1-201ENST00000484753 577 ntBASIC3.2□□□□□ -1.9
LDB3O75112 AC092436.1-201ENST00000506450 503 ntBASIC3.2□□□□□ -1.9
LDB3O75112 FCF1P8-201ENST00000510322 597 ntBASIC3.2□□□□□ -1.9
LDB3O75112 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.2□□□□□ -1.9
LDB3O75112 RNU1-61P-201ENST00000516107 151 ntBASIC3.2□□□□□ -1.9
LDB3O75112 SNORD60.2-201ENST00000516883 86 ntBASIC3.2□□□□□ -1.9
LDB3O75112 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.2□□□□□ -1.9
LDB3O75112 AC011611.1-201ENST00000552179 197 ntBASIC3.2□□□□□ -1.9
LDB3O75112 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.2□□□□□ -1.9
LDB3O75112 MED28P6-201ENST00000558776 231 ntBASIC3.2□□□□□ -1.9
LDB3O75112 MIR4425-201ENST00000580572 84 ntBASIC3.2□□□□□ -1.9
LDB3O75112 MIR4742-201ENST00000581069 85 ntBASIC3.2□□□□□ -1.9
LDB3O75112 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.2□□□□□ -1.9
LDB3O75112 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.2□□□□□ -1.9
LDB3O75112 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.2□□□□□ -1.9
LDB3O75112 AC008739.3-201ENST00000603262 127 ntBASIC3.2□□□□□ -1.9
LDB3O75112 AL355365.1-201ENST00000616480 294 ntBASIC3.2□□□□□ -1.9
LDB3O75112 AP001148.1-201ENST00000624124 2359 ntBASIC3.2□□□□□ -1.9
LDB3O75112 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.2□□□□□ -1.9
LDB3O75112 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LDB3O75112 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
LDB3O75112 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
LDB3O75112 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
LDB3O75112 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LDB3O75112 AC002546.1-201ENST00000588041 2504 ntBASIC3.19□□□□□ -1.9
LDB3O75112 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.19□□□□□ -1.9
LDB3O75112 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
LDB3O75112 AP002088.1-201ENST00000382740 395 ntBASIC3.19□□□□□ -1.9
LDB3O75112 MIR558-201ENST00000384920 94 ntBASIC3.19□□□□□ -1.9
LDB3O75112 MIR184-201ENST00000384962 84 ntBASIC3.19□□□□□ -1.9
LDB3O75112 RNA5SP171-201ENST00000391071 115 ntBASIC3.19□□□□□ -1.9
LDB3O75112 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.19□□□□□ -1.9
LDB3O75112 RNU6-373P-201ENST00000411247 98 ntBASIC3.19□□□□□ -1.9
LDB3O75112 YPEL5P1-201ENST00000419731 367 ntBASIC3.19□□□□□ -1.9
LDB3O75112 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.19□□□□□ -1.9
LDB3O75112 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.19□□□□□ -1.9
LDB3O75112 OR2AS1P-201ENST00000427827 319 ntBASIC3.19□□□□□ -1.9
LDB3O75112 RPS20P5-201ENST00000434808 360 ntBASIC3.19□□□□□ -1.9
LDB3O75112 IFNA20P-201ENST00000436840 528 ntBASIC3.19□□□□□ -1.9
LDB3O75112 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.19□□□□□ -1.9
LDB3O75112 GMFBP1-201ENST00000467831 427 ntBASIC3.19□□□□□ -1.9
LDB3O75112 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.19□□□□□ -1.9
LDB3O75112 Y_RNA.665-201ENST00000516177 98 ntBASIC3.19□□□□□ -1.9
LDB3O75112 RN7SKP219-201ENST00000516825 296 ntBASIC3.19□□□□□ -1.9
LDB3O75112 SNORA31.22-201ENST00000517204 135 ntBASIC3.19□□□□□ -1.9
LDB3O75112 IGKV2D-23-201ENST00000518179 286 ntBASIC3.19□□□□□ -1.9
LDB3O75112 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.19□□□□□ -1.9
LDB3O75112 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.19□□□□□ -1.9
LDB3O75112 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.19□□□□□ -1.9
LDB3O75112 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.19□□□□□ -1.9
LDB3O75112 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.19□□□□□ -1.9
LDB3O75112 AL118558.2-201ENST00000556294 238 ntBASIC3.19□□□□□ -1.9
LDB3O75112 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.19□□□□□ -1.9
LDB3O75112 AC026464.5-201ENST00000562497 722 ntBASIC3.19□□□□□ -1.9
LDB3O75112 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.19□□□□□ -1.9
LDB3O75112 MIR5583-1-201ENST00000580941 59 ntBASIC3.19□□□□□ -1.9
LDB3O75112 AC006557.5-201ENST00000603126 811 ntBASIC3.19□□□□□ -1.9
LDB3O75112 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.19□□□□□ -1.9
LDB3O75112 MIR92B-201ENST00000607575 96 ntBASIC3.19□□□□□ -1.9
LDB3O75112 AL365204.3-201ENST00000612448 685 ntBASIC3.19□□□□□ -1.9
LDB3O75112 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
LDB3O75112 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
LDB3O75112 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.19□□□□□ -1.9
LDB3O75112 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.19□□□□□ -1.9
LDB3O75112 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LDB3O75112 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.19□□□□□ -1.9
LDB3O75112 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LDB3O75112 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.19□□□□□ -1.9
LDB3O75112 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
LDB3O75112 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LDB3O75112 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.18□□□□□ -1.9
LDB3O75112 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LDB3O75112 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 136.4 ms