Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ZNF90P2-204ENST00000419323 1075 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.95□□□□□ -2.1
SHOX2O60902 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.95□□□□□ -2.1
SHOX2O60902 AL160314.1-201ENST00000490836 438 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 AC093801.2-201ENST00000503966 1050 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 AC021146.8-201ENST00000507455 733 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 AC117522.2-201ENST00000510049 657 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC1.95□□□□□ -2.1
SHOX2O60902 AC010186.2-204ENST00000537668 439 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 AC087897.1-201ENST00000550134 156 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 NACAP3-201ENST00000552100 481 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 AC007151.1-201ENST00000572774 483 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 MIR3912-201ENST00000577566 105 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 AC024614.2-201ENST00000577584 372 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 AC090897.2-201ENST00000581715 130 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.95□□□□□ -2.1
SHOX2O60902 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.95□□□□□ -2.1
SHOX2O60902 AC004987.4-201ENST00000603383 338 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 AL357094.1-201ENST00000603845 844 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 AL589743.7-201ENST00000612637 233 ntBASIC1.95□□□□□ -2.1
SHOX2O60902 AC010889.1-201ENST00000566193 2666 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.94□□□□□ -2.1
SHOX2O60902 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
SHOX2O60902 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SHOX2O60902 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SHOX2O60902 RNU6-253P-201ENST00000384730 105 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 SNORA46.1-201ENST00000391069 153 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.94□□□□□ -2.1
SHOX2O60902 MTCO1P56-201ENST00000401674 224 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 RNU6-321P-201ENST00000410912 106 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 MTCYBP38-201ENST00000417160 1123 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.94□□□□□ -2.1
SHOX2O60902 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC1.94□□□□□ -2.1
SHOX2O60902 MRPS36P1-201ENST00000421291 307 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 BPY2DP-201ENST00000422208 265 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 Z98742.2-201ENST00000431564 187 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.94□□□□□ -2.1
SHOX2O60902 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.94□□□□□ -2.1
SHOX2O60902 TPT1P14-201ENST00000448018 505 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 RPL21P134-201ENST00000453468 483 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.94□□□□□ -2.1
SHOX2O60902 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC1.94□□□□□ -2.1
SHOX2O60902 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
SHOX2O60902 SCARNA3-201ENST00000517097 143 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 RNA5SP490-201ENST00000517141 136 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 AC087894.1-201ENST00000538359 518 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC1.94□□□□□ -2.1
SHOX2O60902 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.94□□□□□ -2.1
SHOX2O60902 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC1.94□□□□□ -2.1
SHOX2O60902 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC1.94□□□□□ -2.1
SHOX2O60902 AL353997.4-201ENST00000586196 166 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 AC010928.2-201ENST00000588017 287 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 MTATP6P2-201ENST00000603319 678 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 AP000403.1-201ENST00000603349 851 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 AC007349.4-201ENST00000608114 532 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 AC107214.2-201ENST00000608204 634 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 AC010133.1-201ENST00000615809 842 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 AC091932.3-201ENST00000624223 323 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 GMFB-210ENST00000628554 639 ntTSL 4 BASIC1.94□□□□□ -2.1
SHOX2O60902 MTND5P30-201ENST00000452896 1731 ntBASIC1.94□□□□□ -2.1
SHOX2O60902 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SHOX2O60902 RNU6-223P-201ENST00000362830 107 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 Y_RNA.548-201ENST00000384656 105 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 RNU6-754P-201ENST00000391166 107 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 RPL23AP29-201ENST00000397284 453 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AL590084.2-201ENST00000401481 382 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AL603865.2-201ENST00000401679 213 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC1.93□□□□□ -2.1
SHOX2O60902 RPL35AP22-201ENST00000436855 335 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SHOX2O60902 RNU7-136P-201ENST00000458819 69 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AC080013.2-201ENST00000460866 323 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AC021382.1-201ENST00000483523 359 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AP003355.1-201ENST00000518956 587 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.93□□□□□ -2.1
SHOX2O60902 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.93□□□□□ -2.1
SHOX2O60902 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC1.93□□□□□ -2.1
SHOX2O60902 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.93□□□□□ -2.1
SHOX2O60902 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.93□□□□□ -2.1
SHOX2O60902 MIR1273D-201ENST00000577266 86 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 MIR3199-1-201ENST00000582434 88 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 BBIP1P1-201ENST00000602999 279 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AL450336.1-201ENST00000605180 586 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.93□□□□□ -2.1
SHOX2O60902 AL161423.1-201ENST00000613700 262 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AC010678.1-201ENST00000614118 713 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 SDR42E1P2-201ENST00000614861 481 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AC023158.2-201ENST00000614876 543 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 AL158801.5-201ENST00000623123 465 ntBASIC1.93□□□□□ -2.1
SHOX2O60902 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SHOX2O60902 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SHOX2O60902 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.92□□□□□ -2.1
SHOX2O60902 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.92□□□□□ -2.1
SHOX2O60902 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SHOX2O60902 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
SHOX2O60902 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC1.92□□□□□ -2.1
SHOX2O60902 SNORA64-201ENST00000384674 134 ntBASIC1.92□□□□□ -2.1
SHOX2O60902 TXNP7-201ENST00000406296 293 ntBASIC1.92□□□□□ -2.1
SHOX2O60902 RNU6-516P-201ENST00000411381 104 ntBASIC1.92□□□□□ -2.1
SHOX2O60902 AL356379.1-201ENST00000414105 126 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms