Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 GTF2IP20-201ENST00000431663 360 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.98□□□□□ -1.77
DDX56Q9NY93 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.98□□□□□ -1.77
DDX56Q9NY93 FGF7P6-202ENST00000451282 293 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 RPS29P20-201ENST00000489592 171 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 RPL38P4-201ENST00000502376 214 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 AC074344.1-201ENST00000512823 224 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.98□□□□□ -1.77
DDX56Q9NY93 TRAV37-201ENST00000553906 342 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 LINC00933-203ENST00000559812 219 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 AC092325.1-201ENST00000566449 554 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 MIR4801-201ENST00000582704 82 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.98□□□□□ -1.77
DDX56Q9NY93 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.98□□□□□ -1.77
DDX56Q9NY93 U2.17-201ENST00000611454 95 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
DDX56Q9NY93 AC010338.1-201ENST00000621823 717 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 MIR6500-201ENST00000622700 86 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
DDX56Q9NY93 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
DDX56Q9NY93 MAPK10-322ENST00000641485 4530 ntBASIC3.98□□□□□ -1.77
DDX56Q9NY93 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
DDX56Q9NY93 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
DDX56Q9NY93 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
DDX56Q9NY93 ADAM3A-203ENST00000461344 2157 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.97□□□□□ -1.77
DDX56Q9NY93 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
DDX56Q9NY93 RIOK3P1-201ENST00000418778 1528 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
DDX56Q9NY93 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
DDX56Q9NY93 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 RNY3P3-201ENST00000363816 102 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 Y_RNA.480-201ENST00000384364 102 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.97□□□□□ -1.77
DDX56Q9NY93 RPS15AP5-201ENST00000436276 388 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 AL360271.2-201ENST00000447710 161 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 MRPS31P2-201ENST00000451581 518 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 AL583843.1-201ENST00000456070 346 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.97□□□□□ -1.77
DDX56Q9NY93 RN7SKP122-201ENST00000515923 296 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 RN7SKP83-201ENST00000516512 178 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.97□□□□□ -1.77
DDX56Q9NY93 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.97□□□□□ -1.77
DDX56Q9NY93 BNIP3P6-201ENST00000549284 499 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.97□□□□□ -1.77
DDX56Q9NY93 AC120057.2-201ENST00000571520 271 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 AC005498.1-201ENST00000592125 465 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.97□□□□□ -1.77
DDX56Q9NY93 AP000907.4-201ENST00000604143 237 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 AL136295.6-201ENST00000610486 658 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
DDX56Q9NY93 AC022418.1-201ENST00000624118 445 ntBASIC3.97□□□□□ -1.77
DDX56Q9NY93 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.97□□□□□ -1.77
DDX56Q9NY93 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.97□□□□□ -1.77
DDX56Q9NY93 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.97□□□□□ -1.77
DDX56Q9NY93 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.96□□□□□ -1.77
DDX56Q9NY93 AC004520.1-201ENST00000608362 1413 ntBASIC3.96□□□□□ -1.77
DDX56Q9NY93 CEP170P1-201ENST00000502249 4587 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.96□□□□□ -1.78
DDX56Q9NY93 TNPO1P3-201ENST00000436471 2662 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 RNU4-66P-201ENST00000365199 138 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 SNORA62-201ENST00000365493 153 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 CD24P4-201ENST00000382840 243 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 RNU6-166P-201ENST00000384371 107 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 RNA5SP317-201ENST00000410176 116 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 RNA5SP311-201ENST00000411290 116 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 AL353621.1-201ENST00000418219 243 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 AC000111.3-201ENST00000433478 193 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 AC073063.1-201ENST00000434352 607 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 BTF3P15-201ENST00000455606 336 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 FAM133DP-201ENST00000464802 691 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 MTCO3P38-201ENST00000468910 766 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 RN7SL330P-201ENST00000469709 307 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 FAM92A1P2-202ENST00000504766 877 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 RAC1P2-201ENST00000511164 579 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 RNA5SP315-201ENST00000516340 116 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 RNA5SP312-201ENST00000517068 116 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 AC234778.2-201ENST00000566241 354 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 AC025281.1-201ENST00000567026 265 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 SNORA59B-202ENST00000578183 701 ntBASIC3.96□□□□□ -1.78
DDX56Q9NY93 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
DDX56Q9NY93 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
DDX56Q9NY93 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
DDX56Q9NY93 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
DDX56Q9NY93 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.95□□□□□ -1.78
DDX56Q9NY93 Y_RNA.89-201ENST00000363031 102 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 196.6 ms