Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 COL6A4P2-205ENST00000509855 506 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.09□□□□□ -2.08
USP42Q9H9J4 MIR3618-201ENST00000580330 88 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC124283.4-201ENST00000581815 456 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC098483.2-201ENST00000603158 454 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC021749.1-201ENST00000604322 607 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AL161729.4-201ENST00000604650 476 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC025588.2-201ENST00000604851 466 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC245884.12-201ENST00000615364 59 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC012640.5-201ENST00000623897 319 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 AC087821.2-201ENST00000637086 450 ntBASIC2.09□□□□□ -2.08
USP42Q9H9J4 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.09□□□□□ -2.08
USP42Q9H9J4 AL137003.2-201ENST00000606924 2538 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
USP42Q9H9J4 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
USP42Q9H9J4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
USP42Q9H9J4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
USP42Q9H9J4 Y_RNA.40-201ENST00000362645 93 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 RNU6-884P-201ENST00000363889 107 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 RNU6-741P-201ENST00000383889 107 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 RNU6-217P-201ENST00000384164 104 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 RNU6-220P-201ENST00000390919 107 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 MCTS2P-201ENST00000394552 546 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 RNU6-1328P-201ENST00000410938 106 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 AL139421.1-201ENST00000423010 169 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 SDCBPP1-201ENST00000440192 890 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 AC245517.4-201ENST00000448601 281 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.08□□□□□ -2.08
USP42Q9H9J4 RNU6-528P-201ENST00000516926 100 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.08□□□□□ -2.08
USP42Q9H9J4 AL132857.1-201ENST00000555180 708 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.08□□□□□ -2.08
USP42Q9H9J4 AC090615.1-201ENST00000577519 154 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 AC024614.2-201ENST00000577584 372 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 MIR4666A-201ENST00000580160 79 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 MIR3199-1-201ENST00000582434 88 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 APOOP1-201ENST00000604695 592 ntBASIC2.08□□□□□ -2.08
USP42Q9H9J4 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC2.08□□□□□ -2.08
USP42Q9H9J4 AC006026.1-201ENST00000444025 1803 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 UBE2L2-201ENST00000254302 429 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.07□□□□□ -2.08
USP42Q9H9J4 RNU6-28P-201ENST00000362378 107 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 RNU1-42P-201ENST00000364033 160 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 SNORA3A-201ENST00000364113 130 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 RNU6-60P-201ENST00000364792 103 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
USP42Q9H9J4 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.07□□□□□ -2.08
USP42Q9H9J4 SEPT14P24-201ENST00000447236 180 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC2.07□□□□□ -2.08
USP42Q9H9J4 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.07□□□□□ -2.08
USP42Q9H9J4 SNRPFP4-201ENST00000456366 242 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 TMEM251P1-201ENST00000503717 318 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 AC006499.2-201ENST00000513470 337 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 RNU5F-8P-201ENST00000515941 111 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 RNA5SP490-201ENST00000517141 136 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 SCARNA11.3-201ENST00000517276 130 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 AC026616.1-201ENST00000523157 525 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 ANP32BP3-201ENST00000559213 706 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 AC012360.2-201ENST00000609349 391 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 AC020658.4-201ENST00000613987 684 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 AL603758.1-201ENST00000618654 241 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 AC073592.7-201ENST00000623659 507 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 AL163152.1-201ENST00000642001 374 ntBASIC2.07□□□□□ -2.08
USP42Q9H9J4 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.07□□□□□ -2.08
USP42Q9H9J4 ZNF876P-202ENST00000398732 1485 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.06□□□□□ -2.08
USP42Q9H9J4 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
USP42Q9H9J4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.06□□□□□ -2.08
USP42Q9H9J4 CYCSP48-201ENST00000417124 323 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 EIF4EP4-201ENST00000424916 578 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 DPRXP1-201ENST00000426312 460 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC2.06□□□□□ -2.08
USP42Q9H9J4 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.06□□□□□ -2.08
USP42Q9H9J4 DNAJC19P4-201ENST00000440115 345 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 MTCYBP11-201ENST00000447254 1109 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.06□□□□□ -2.08
USP42Q9H9J4 RPS20P20-201ENST00000460498 340 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 AC022447.3-201ENST00000506865 495 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 RNU6-1261P-201ENST00000517194 104 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 NDUFS5P6-201ENST00000529136 295 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.06□□□□□ -2.08
USP42Q9H9J4 SNORD53B-201ENST00000577887 78 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 MIR4637-201ENST00000582405 84 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 RPS15AP11-201ENST00000594193 385 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.06□□□□□ -2.08
USP42Q9H9J4 AC025594.3-201ENST00000613068 790 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 AL449363.1-201ENST00000617815 186 ntBASIC2.06□□□□□ -2.08
USP42Q9H9J4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
USP42Q9H9J4 AC027514.1-201ENST00000588561 1603 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
USP42Q9H9J4 SNRPEP3-201ENST00000338402 276 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AL592310.1-201ENST00000414330 671 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 HMGB1P49-201ENST00000418882 569 ntBASIC2.05□□□□□ -2.08
USP42Q9H9J4 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.05□□□□□ -2.08
USP42Q9H9J4 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.05□□□□□ -2.08
USP42Q9H9J4 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms