Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SOX4Q06945 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
SOX4Q06945 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX4Q06945 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.68□□□□□ -1.66
SOX4Q06945 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX4Q06945 ASNSP1-201ENST00000518311 1939 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 AP000560.1-201ENST00000624150 1937 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
SOX4Q06945 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.68□□□□□ -1.66
SOX4Q06945 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
SOX4Q06945 RNU6-595P-201ENST00000363944 107 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 RNU6-1317P-201ENST00000364582 104 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 RNU6-1179P-201ENST00000384667 107 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 SNORD96B-201ENST00000386148 79 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 SNORD58.1-201ENST00000391313 66 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 AL603910.2-201ENST00000407268 136 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 AP000275.1-201ENST00000411943 390 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.68□□□□□ -1.66
SOX4Q06945 AL159987.2-201ENST00000432754 307 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.68□□□□□ -1.66
SOX4Q06945 RPL12P46-201ENST00000436610 195 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SOX4Q06945 RNA5SP103-201ENST00000459503 118 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 RNU6-1037P-201ENST00000459571 107 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.68□□□□□ -1.66
SOX4Q06945 RPS15AP34-201ENST00000487776 387 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.68□□□□□ -1.66
SOX4Q06945 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.68□□□□□ -1.66
SOX4Q06945 IGKV2-23-201ENST00000518729 323 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.68□□□□□ -1.66
SOX4Q06945 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.68□□□□□ -1.66
SOX4Q06945 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.68□□□□□ -1.66
SOX4Q06945 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.68□□□□□ -1.66
SOX4Q06945 MIR4512-201ENST00000583257 77 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 AC123912.5-201ENST00000605470 343 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 AC008962.1-201ENST00000605729 304 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.68□□□□□ -1.66
SOX4Q06945 AC007546.2-201ENST00000623996 360 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX4Q06945 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
SOX4Q06945 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
SOX4Q06945 AC093535.2-201ENST00000624769 2326 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.68□□□□□ -1.66
SOX4Q06945 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
SOX4Q06945 Z75746.1-201ENST00000440243 2080 ntBASIC4.68□□□□□ -1.66
SOX4Q06945 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SOX4Q06945 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SOX4Q06945 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.67□□□□□ -1.66
SOX4Q06945 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
SOX4Q06945 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
SOX4Q06945 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
SOX4Q06945 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SOX4Q06945 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.67□□□□□ -1.66
SOX4Q06945 RPL9P7-201ENST00000330965 580 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 MIR383-201ENST00000362257 73 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 Y_RNA.54-201ENST00000362766 105 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 RNA5SP307-201ENST00000362863 116 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 RNU6-1249P-201ENST00000363237 111 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 RNA5SP515-201ENST00000364570 118 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 Y_RNA.352-201ENST00000365439 102 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
SOX4Q06945 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.67□□□□□ -1.66
SOX4Q06945 RNU6-712P-201ENST00000410558 100 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 SNORA74C-2-201ENST00000411179 201 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 AL157831.1-201ENST00000426134 473 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.67□□□□□ -1.66
SOX4Q06945 AL513043.1-201ENST00000439124 535 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 AL138752.1-201ENST00000452964 351 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.67□□□□□ -1.66
SOX4Q06945 RPL9P9-202ENST00000466501 579 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.67□□□□□ -1.66
SOX4Q06945 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SOX4Q06945 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.67□□□□□ -1.66
SOX4Q06945 SNORA31.6-201ENST00000516241 130 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 RNU4-71P-201ENST00000516258 113 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 SNORA31.9-201ENST00000516429 84 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 RNA5SP49-201ENST00000516450 115 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 SNORA31.22-201ENST00000517204 135 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 AC022790.1-201ENST00000522872 204 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 MIR5696-201ENST00000578474 85 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.67□□□□□ -1.66
SOX4Q06945 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.67□□□□□ -1.66
SOX4Q06945 AL021997.2-201ENST00000615674 271 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 AC005086.4-201ENST00000623065 213 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 AL450472.1-202ENST00000637286 180 ntBASIC4.67□□□□□ -1.66
SOX4Q06945 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
SOX4Q06945 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SOX4Q06945 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.67□□□□□ -1.66
SOX4Q06945 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SOX4Q06945 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SOX4Q06945 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.67□□□□□ -1.66
SOX4Q06945 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SOX4Q06945 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.66□□□□□ -1.66
SOX4Q06945 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SOX4Q06945 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SOX4Q06945 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SOX4Q06945 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.66□□□□□ -1.66
SOX4Q06945 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
SOX4Q06945 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms