Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
MSH3P20585 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
MSH3P20585 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
MSH3P20585 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
MSH3P20585 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
MSH3P20585 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
MSH3P20585 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.06□□□□□ -1.92
MSH3P20585 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.06□□□□□ -1.92
MSH3P20585 RPS20P5-201ENST00000434808 360 ntBASIC3.06□□□□□ -1.92
MSH3P20585 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.06□□□□□ -1.92
MSH3P20585 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.06□□□□□ -1.92
MSH3P20585 RPS3AP12-201ENST00000443616 753 ntBASIC3.06□□□□□ -1.92
MSH3P20585 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.06□□□□□ -1.92
MSH3P20585 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.06□□□□□ -1.92
MSH3P20585 SNORD97-201ENST00000459187 142 ntBASIC3.06□□□□□ -1.92
MSH3P20585 HSPE1P6-201ENST00000479457 291 ntBASIC3.06□□□□□ -1.92
MSH3P20585 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.06□□□□□ -1.92
MSH3P20585 AC108860.1-201ENST00000484521 383 ntBASIC3.06□□□□□ -1.92
MSH3P20585 AC006445.1-201ENST00000491925 405 ntBASIC3.06□□□□□ -1.92
MSH3P20585 AC079382.1-201ENST00000493346 557 ntBASIC3.06□□□□□ -1.92
MSH3P20585 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.06□□□□□ -1.92
MSH3P20585 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.06□□□□□ -1.92
MSH3P20585 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.06□□□□□ -1.92
MSH3P20585 RNA5SP385-201ENST00000515947 110 ntBASIC3.06□□□□□ -1.92
MSH3P20585 RN7SKP57-201ENST00000517248 293 ntBASIC3.06□□□□□ -1.92
MSH3P20585 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.06□□□□□ -1.92
MSH3P20585 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.06□□□□□ -1.92
MSH3P20585 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.06□□□□□ -1.92
MSH3P20585 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.06□□□□□ -1.92
MSH3P20585 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.06□□□□□ -1.92
MSH3P20585 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.06□□□□□ -1.92
MSH3P20585 AC093012.1-202ENST00000549403 582 ntBASIC3.06□□□□□ -1.92
MSH3P20585 AL359212.1-201ENST00000556608 614 ntBASIC3.06□□□□□ -1.92
MSH3P20585 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.06□□□□□ -1.92
MSH3P20585 MIR4506-201ENST00000584693 77 ntBASIC3.06□□□□□ -1.92
MSH3P20585 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.06□□□□□ -1.92
MSH3P20585 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.06□□□□□ -1.92
MSH3P20585 AC012493.2-201ENST00000595083 291 ntBASIC3.06□□□□□ -1.92
MSH3P20585 AC012507.3-201ENST00000603556 477 ntBASIC3.06□□□□□ -1.92
MSH3P20585 Z84480.1-201ENST00000605131 311 ntBASIC3.06□□□□□ -1.92
MSH3P20585 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.06□□□□□ -1.92
MSH3P20585 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.06□□□□□ -1.92
MSH3P20585 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.06□□□□□ -1.92
MSH3P20585 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
MSH3P20585 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.06□□□□□ -1.92
MSH3P20585 ZNF807-201ENST00000328088 1707 ntBASIC3.05□□□□□ -1.92
MSH3P20585 RNA5SP374-201ENST00000362939 125 ntBASIC3.05□□□□□ -1.92
MSH3P20585 RNU6-1120P-201ENST00000362988 108 ntBASIC3.05□□□□□ -1.92
MSH3P20585 RNU6-960P-201ENST00000364056 120 ntBASIC3.05□□□□□ -1.92
MSH3P20585 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
MSH3P20585 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
MSH3P20585 SNORD67-201ENST00000390833 111 ntBASIC3.05□□□□□ -1.92
MSH3P20585 RNU6-780P-201ENST00000391030 104 ntBASIC3.05□□□□□ -1.92
MSH3P20585 CIR1P3-201ENST00000405137 479 ntBASIC3.05□□□□□ -1.92
MSH3P20585 AL590002.1-201ENST00000406554 418 ntBASIC3.05□□□□□ -1.92
MSH3P20585 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.05□□□□□ -1.92
MSH3P20585 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.05□□□□□ -1.92
MSH3P20585 MED13P1-201ENST00000428342 171 ntBASIC3.05□□□□□ -1.92
MSH3P20585 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.05□□□□□ -1.92
MSH3P20585 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.05□□□□□ -1.92
MSH3P20585 FGF7P6-202ENST00000451282 293 ntBASIC3.05□□□□□ -1.92
MSH3P20585 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.05□□□□□ -1.92
MSH3P20585 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.05□□□□□ -1.92
MSH3P20585 RN7SL75P-201ENST00000461926 281 ntBASIC3.05□□□□□ -1.92
MSH3P20585 AL121769.1-201ENST00000469473 401 ntBASIC3.05□□□□□ -1.92
MSH3P20585 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.05□□□□□ -1.92
MSH3P20585 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.05□□□□□ -1.92
MSH3P20585 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.05□□□□□ -1.92
MSH3P20585 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.05□□□□□ -1.92
MSH3P20585 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.05□□□□□ -1.92
MSH3P20585 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.05□□□□□ -1.92
MSH3P20585 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.05□□□□□ -1.92
MSH3P20585 AK6P1-201ENST00000540219 478 ntBASIC3.05□□□□□ -1.92
MSH3P20585 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.05□□□□□ -1.92
MSH3P20585 HMGB1P33-201ENST00000563485 527 ntBASIC3.05□□□□□ -1.92
MSH3P20585 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.05□□□□□ -1.92
MSH3P20585 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.05□□□□□ -1.92
MSH3P20585 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.05□□□□□ -1.92
MSH3P20585 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.05□□□□□ -1.92
MSH3P20585 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.05□□□□□ -1.92
MSH3P20585 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.05□□□□□ -1.92
MSH3P20585 AC106900.2-201ENST00000604994 317 ntBASIC3.05□□□□□ -1.92
MSH3P20585 AP001330.5-201ENST00000607176 411 ntBASIC3.05□□□□□ -1.92
MSH3P20585 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.05□□□□□ -1.92
MSH3P20585 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.05□□□□□ -1.92
MSH3P20585 MIR8057-201ENST00000620957 69 ntBASIC3.05□□□□□ -1.92
MSH3P20585 AC139792.3-201ENST00000623525 224 ntBASIC3.05□□□□□ -1.92
MSH3P20585 FRG1KP-201ENST00000623592 341 ntBASIC3.05□□□□□ -1.92
MSH3P20585 AC005609.4-201ENST00000625071 447 ntBASIC3.05□□□□□ -1.92
MSH3P20585 AC008264.2-201ENST00000610193 3731 ntBASIC3.05□□□□□ -1.92
MSH3P20585 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
MSH3P20585 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
MSH3P20585 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.04□□□□□ -1.92
MSH3P20585 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
MSH3P20585 ELF2P3-201ENST00000445099 1506 ntBASIC3.04□□□□□ -1.92
MSH3P20585 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.04□□□□□ -1.92
MSH3P20585 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.04□□□□□ -1.92
MSH3P20585 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.04□□□□□ -1.92
MSH3P20585 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
MSH3P20585 DEFB108F-201ENST00000344638 222 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms