Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC091304.6-201ENST00000619761 202 ntBASIC2.62□□□□□ -1.99
SDC3O75056 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC2.62□□□□□ -1.99
SDC3O75056 AL355596.1-201ENST00000565399 3996 ntBASIC2.62□□□□□ -1.99
SDC3O75056 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SDC3O75056 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
SDC3O75056 CR848007.1-201ENST00000442354 1699 ntBASIC2.61□□□□□ -1.99
SDC3O75056 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.61□□□□□ -1.99
SDC3O75056 RPL9P7-201ENST00000330965 580 ntBASIC2.61□□□□□ -1.99
SDC3O75056 RNU6-884P-201ENST00000363889 107 ntBASIC2.61□□□□□ -1.99
SDC3O75056 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.61□□□□□ -1.99
SDC3O75056 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
SDC3O75056 RNU1-109P-201ENST00000383960 147 ntBASIC2.61□□□□□ -1.99
SDC3O75056 MIR627-201ENST00000384979 97 ntBASIC2.61□□□□□ -1.99
SDC3O75056 AL031577.2-201ENST00000404133 280 ntBASIC2.61□□□□□ -1.99
SDC3O75056 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC3O75056 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.61□□□□□ -1.99
SDC3O75056 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.61□□□□□ -1.99
SDC3O75056 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC3O75056 RPS6P15-201ENST00000431996 751 ntBASIC2.61□□□□□ -1.99
SDC3O75056 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC3O75056 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.61□□□□□ -1.99
SDC3O75056 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC3O75056 RPL26P9-201ENST00000457466 433 ntBASIC2.61□□□□□ -1.99
SDC3O75056 AC112204.1-201ENST00000502591 103 ntBASIC2.61□□□□□ -1.99
SDC3O75056 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
SDC3O75056 MTND5P13-201ENST00000513046 1079 ntBASIC2.61□□□□□ -1.99
SDC3O75056 MTND4LP18-201ENST00000526864 291 ntBASIC2.61□□□□□ -1.99
SDC3O75056 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC3O75056 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.61□□□□□ -1.99
SDC3O75056 AC123904.2-201ENST00000548059 300 ntBASIC2.61□□□□□ -1.99
SDC3O75056 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.61□□□□□ -1.99
SDC3O75056 AC135628.1-201ENST00000568867 534 ntBASIC2.61□□□□□ -1.99
SDC3O75056 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC3O75056 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.61□□□□□ -1.99
SDC3O75056 AC104984.5-201ENST00000586878 94 ntBASIC2.61□□□□□ -1.99
SDC3O75056 WISP1-OT1-201ENST00000602893 642 ntBASIC2.61□□□□□ -1.99
SDC3O75056 AC239868.4-201ENST00000608318 671 ntBASIC2.61□□□□□ -1.99
SDC3O75056 AC008498.1-201ENST00000613012 531 ntBASIC2.61□□□□□ -1.99
SDC3O75056 AC104010.1-201ENST00000616889 150 ntBASIC2.61□□□□□ -1.99
SDC3O75056 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.61□□□□□ -1.99
SDC3O75056 AL603755.1-201ENST00000619504 163 ntBASIC2.61□□□□□ -1.99
SDC3O75056 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.61□□□□□ -1.99
SDC3O75056 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.61□□□□□ -1.99
SDC3O75056 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
SDC3O75056 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
SDC3O75056 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.61□□□□□ -1.99
SDC3O75056 PABPC1P9-201ENST00000426076 1612 ntBASIC2.6□□□□□ -1.99
SDC3O75056 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SDC3O75056 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
SDC3O75056 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.6□□□□□ -1.99
SDC3O75056 MIR26A1-201ENST00000362205 77 ntBASIC2.6□□□□□ -1.99
SDC3O75056 SNORD62.1-201ENST00000362541 86 ntBASIC2.6□□□□□ -1.99
SDC3O75056 RNU6-809P-201ENST00000384461 107 ntBASIC2.6□□□□□ -1.99
SDC3O75056 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
SDC3O75056 AL590004.2-201ENST00000404787 371 ntBASIC2.6□□□□□ -1.99
SDC3O75056 RNU6-920P-201ENST00000410926 92 ntBASIC2.6□□□□□ -1.99
SDC3O75056 ZNF90P2-204ENST00000419323 1075 ntBASIC2.6□□□□□ -1.99
SDC3O75056 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.6□□□□□ -1.99
SDC3O75056 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.6□□□□□ -1.99
SDC3O75056 MTATP6P30-201ENST00000443540 664 ntBASIC2.6□□□□□ -1.99
SDC3O75056 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.6□□□□□ -1.99
SDC3O75056 ZNF114P1-201ENST00000453500 292 ntBASIC2.6□□□□□ -1.99
SDC3O75056 MTCO2P6-201ENST00000463134 685 ntBASIC2.6□□□□□ -1.99
SDC3O75056 RPS15AP34-201ENST00000487776 387 ntBASIC2.6□□□□□ -1.99
SDC3O75056 AC105252.1-201ENST00000503089 286 ntBASIC2.6□□□□□ -1.99
SDC3O75056 AC098862.1-201ENST00000504991 413 ntBASIC2.6□□□□□ -1.99
SDC3O75056 RNA5SP290-201ENST00000517133 127 ntBASIC2.6□□□□□ -1.99
SDC3O75056 SUB1P1-201ENST00000524415 382 ntBASIC2.6□□□□□ -1.99
SDC3O75056 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
SDC3O75056 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.6□□□□□ -1.99
SDC3O75056 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SDC3O75056 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SDC3O75056 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.6□□□□□ -1.99
SDC3O75056 ZNF519P3-201ENST00000557158 1032 ntBASIC2.6□□□□□ -1.99
SDC3O75056 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.6□□□□□ -1.99
SDC3O75056 AC012435.1-202ENST00000568772 240 ntBASIC2.6□□□□□ -1.99
SDC3O75056 AC008277.2-201ENST00000605196 797 ntBASIC2.6□□□□□ -1.99
SDC3O75056 AL391813.2-201ENST00000609113 322 ntBASIC2.6□□□□□ -1.99
SDC3O75056 AC108747.1-201ENST00000609508 535 ntBASIC2.6□□□□□ -1.99
SDC3O75056 AL161734.1-201ENST00000609720 557 ntBASIC2.6□□□□□ -1.99
SDC3O75056 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.6□□□□□ -1.99
SDC3O75056 uc_338.12-201ENST00000616344 181 ntBASIC2.6□□□□□ -1.99
SDC3O75056 AL136313.1-201ENST00000624804 202 ntBASIC2.6□□□□□ -1.99
SDC3O75056 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.6□□□□□ -1.99
SDC3O75056 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -1.99
SDC3O75056 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
SDC3O75056 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
SDC3O75056 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.59□□□□□ -1.99
SDC3O75056 RNU2-62P-201ENST00000410868 191 ntBASIC2.59□□□□□ -1.99
SDC3O75056 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.59□□□□□ -1.99
SDC3O75056 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.59□□□□□ -1.99
SDC3O75056 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.59□□□□□ -1.99
SDC3O75056 RPL9P33-201ENST00000484311 566 ntBASIC2.59□□□□□ -1.99
SDC3O75056 AC109486.1-201ENST00000486833 374 ntBASIC2.59□□□□□ -1.99
SDC3O75056 RPL36AP51-201ENST00000487216 318 ntBASIC2.59□□□□□ -1.99
SDC3O75056 RPS29P20-201ENST00000489592 171 ntBASIC2.59□□□□□ -1.99
SDC3O75056 AC113155.1-201ENST00000511141 769 ntBASIC2.59□□□□□ -1.99
SDC3O75056 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.59□□□□□ -1.99
SDC3O75056 AC025881.1-201ENST00000518851 512 ntBASIC2.59□□□□□ -1.99
SDC3O75056 AC022616.6-201ENST00000520479 119 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 197.7 ms