Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 Y_RNA.245-201ENST00000364493 95 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 RNU6-326P-201ENST00000365480 107 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 BTF3L4P2-201ENST00000392798 346 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 CKS1BP6-201ENST00000424932 240 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AL356867.1-201ENST00000429623 299 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 TDGF1P1-201ENST00000445734 527 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AC034236.1-201ENST00000469891 373 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AC107393.1-201ENST00000512403 346 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 RNU4-60P-201ENST00000517239 135 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AC133555.2-201ENST00000550213 292 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AC093249.4-201ENST00000564755 259 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AC006272.2-201ENST00000594725 163 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 MIR6780A-201ENST00000615089 68 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AC027309.3-201ENST00000623419 351 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AC138965.3-201ENST00000623875 498 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AL450326.2-201ENST00000421913 1962 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 AL359693.1-201ENST00000614959 2407 ntBASIC5.03□□□□□ -1.6
USP3Q9Y6I4 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
USP3Q9Y6I4 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.02□□□□□ -1.61
USP3Q9Y6I4 ZFRP1-201ENST00000457579 2970 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 AL592437.2-201ENST00000421655 2434 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 OR4G2P-202ENST00000641004 1759 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 MFSD8-216ENST00000641147 4009 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 RNU6-1020P-201ENST00000363684 107 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 RNU6-682P-201ENST00000363843 106 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
USP3Q9Y6I4 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC5.02□□□□□ -1.61
USP3Q9Y6I4 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC5.02□□□□□ -1.61
USP3Q9Y6I4 AP000907.1-201ENST00000428428 510 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC5.02□□□□□ -1.61
USP3Q9Y6I4 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.02□□□□□ -1.61
USP3Q9Y6I4 HMGB3P16-201ENST00000508037 287 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 AC091868.1-201ENST00000508746 304 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 RNU1-6P-201ENST00000516290 144 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 AC087441.2-201ENST00000529141 262 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.02□□□□□ -1.61
USP3Q9Y6I4 MIR4643-201ENST00000577473 78 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 MIR4700-201ENST00000578311 74 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 MIR4659A-201ENST00000580269 81 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 MIR4270-201ENST00000581799 70 ntBASIC5.02□□□□□ -1.61
USP3Q9Y6I4 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.02□□□□□ -1.61
USP3Q9Y6I4 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
USP3Q9Y6I4 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
USP3Q9Y6I4 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.02□□□□□ -1.61
USP3Q9Y6I4 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 RNU6-1301P-201ENST00000362724 104 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 Y_RNA.123-201ENST00000363338 102 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 SNORD50.2-201ENST00000365465 70 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 Y_RNA.504-201ENST00000384481 104 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 SNORA40C-201ENST00000391285 128 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 AL590139.1-201ENST00000416267 400 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 EIF4HP2-201ENST00000424380 563 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 AL589765.3-201ENST00000446084 462 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 snoU13.30-201ENST00000458951 104 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 RPS29P22-201ENST00000472363 168 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 RPS23P1-201ENST00000491662 432 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 AC060766.3-201ENST00000591442 263 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 B3GNTL1P2-201ENST00000603673 288 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 RNA5SP108-201ENST00000605921 117 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 SNORD113-5-201ENST00000607261 78 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 MIR6853-201ENST00000619642 74 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 SAMMSON-213ENST00000641336 1521 ntBASIC5.01□□□□□ -1.61
USP3Q9Y6I4 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.01□□□□□ -1.61
USP3Q9Y6I4 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5□□□□□ -1.61
USP3Q9Y6I4 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5□□□□□ -1.61
USP3Q9Y6I4 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC5□□□□□ -1.61
USP3Q9Y6I4 RNU5E-7P-201ENST00000365290 117 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 RNU6-1081P-201ENST00000384537 107 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 MIR613-201ENST00000385248 95 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 AL590762.2-201ENST00000395798 571 ntBASIC5□□□□□ -1.61
USP3Q9Y6I4 Y_RNA.626-201ENST00000411288 95 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms