Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AP000238.1-201ENST00000608759 426 ntBASIC0.49□□□□□ -2.33
LINC00643Q86TS7 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.49□□□□□ -2.33
LINC00643Q86TS7 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
LINC00643Q86TS7 RNU6-251P-201ENST00000363235 104 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.48□□□□□ -2.33
LINC00643Q86TS7 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC0.48□□□□□ -2.33
LINC00643Q86TS7 RPS27P16-201ENST00000425758 201 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 USP9YP24-201ENST00000434374 697 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC0.48□□□□□ -2.33
LINC00643Q86TS7 TRAPPC13P1-201ENST00000435991 1062 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 MTCO2P20-201ENST00000437339 673 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AC233982.1-201ENST00000451247 436 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AL137159.1-201ENST00000452808 512 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC0.48□□□□□ -2.33
LINC00643Q86TS7 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AP002770.2-201ENST00000543613 532 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AL512310.1-201ENST00000548639 172 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AC103987.3-201ENST00000582071 292 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 AL391813.1-201ENST00000603098 260 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 MIR5739-201ENST00000619803 80 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC0.48□□□□□ -2.33
LINC00643Q86TS7 MIR6866-201ENST00000638146 69 ntBASIC0.48□□□□□ -2.33
LINC00643Q86TS7 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 RNU6-253P-201ENST00000384730 105 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 RNU2-64P-201ENST00000411315 191 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 ZNF863P-201ENST00000426746 417 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AL139415.2-201ENST00000431968 163 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 RPL7P29-201ENST00000437151 728 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC004865.1-201ENST00000442276 1003 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 FAM103A2P-201ENST00000444122 354 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 MRPL35P4-201ENST00000453682 566 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC114982.1-201ENST00000469402 321 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 RPS3AP14-201ENST00000483907 780 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 MTCYBP16-201ENST00000509187 1129 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC067904.2-201ENST00000517322 1283 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC022616.2-201ENST00000523185 300 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC084364.2-201ENST00000546924 395 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 EEF1B2P4-201ENST00000551398 348 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC002400.1-201ENST00000569310 726 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 MIR4661-201ENST00000582720 75 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC080013.4-201ENST00000607624 649 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AL078604.3-201ENST00000615580 211 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC006213.4-201ENST00000616184 634 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 MIR6130-201ENST00000619419 109 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 AC024595.1-201ENST00000623088 387 ntBASIC0.47□□□□□ -2.33
LINC00643Q86TS7 RNU1-124P-201ENST00000363861 145 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 RNA5SP501-201ENST00000410990 112 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 TPMTP3-201ENST00000411928 735 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AC004965.1-201ENST00000413033 213 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC0.46□□□□□ -2.34
LINC00643Q86TS7 Z98742.3-201ENST00000418637 326 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 USP9YP26-201ENST00000421008 661 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 NDUFB4P7-201ENST00000423198 363 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 USP9YP18-201ENST00000425912 695 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 C1DP1-201ENST00000426049 402 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AL035410.1-201ENST00000427409 427 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 YME1L1P1-201ENST00000429435 297 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC0.46□□□□□ -2.34
LINC00643Q86TS7 USP9YP17-201ENST00000444617 696 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC0.46□□□□□ -2.34
LINC00643Q86TS7 FCF1P6-201ENST00000456841 595 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AP1S2P1-201ENST00000457344 379 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 RPL26P9-201ENST00000457466 433 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 CYP2C59P-201ENST00000457790 269 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 FTH1P2-201ENST00000466086 412 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AP001025.1-201ENST00000486139 332 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AC145146.1-201ENST00000496370 254 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AP005136.1-201ENST00000579765 429 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AC073544.2-201ENST00000601155 540 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AC021171.1-201ENST00000603137 706 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AC010738.1-201ENST00000604970 987 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 AL021879.1-201ENST00000611756 288 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC0.46□□□□□ -2.34
LINC00643Q86TS7 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC0.46□□□□□ -2.34
LINC00643Q86TS7 OR4G11P-202ENST00000642116 1414 ntBASIC0.46□□□□□ -2.34
LINC00643Q86TS7 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC0.46□□□□□ -2.34
LINC00643Q86TS7 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms