Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU4-28P-201ENST00000364739 141 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 RNU6-278P-201ENST00000390945 109 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 BPY2DP-201ENST00000422208 265 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 SKA2P1-201ENST00000425592 390 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC098826.1-201ENST00000433943 471 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AL354941.1-201ENST00000438600 464 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC096576.1-201ENST00000489014 359 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 RPS27AP10-201ENST00000496103 208 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 RPL37P25-201ENST00000507308 276 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 MRPS36P3-201ENST00000519284 130 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 MIR4319-201ENST00000577285 85 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC112187.2-201ENST00000604345 283 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 OR10AB1P-201ENST00000609613 938 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AC013562.2-201ENST00000611632 603 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 U2.21-201ENST00000637295 81 ntBASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CCDC40Q4G0X9 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
CCDC40Q4G0X9 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AC093536.2-201ENST00000565257 1406 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 RNA5SP456-201ENST00000364002 114 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 RN7SKP226-201ENST00000364912 300 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 SNORA72.3-201ENST00000365074 132 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 MIR196B-201ENST00000384852 84 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 MIR27B-201ENST00000385129 97 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 MIR23A-201ENST00000385245 73 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 Z80107.1-201ENST00000436830 412 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AC104389.3-201ENST00000445629 235 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AL606662.1-201ENST00000445763 553 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AC108059.3-201ENST00000456388 214 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 RPL23AP45-201ENST00000476406 468 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 RPF2P2-201ENST00000504693 896 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 RN7SKP24-201ENST00000515888 284 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 RNA5SP165-201ENST00000517142 115 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AP001372.4-201ENST00000524889 472 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AC018714.1-201ENST00000605028 208 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AC107214.2-201ENST00000608204 634 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 AC068057.2-201ENST00000624047 895 ntBASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
CCDC40Q4G0X9 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 Y_RNA.46-201ENST00000362695 102 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 RNU6-778P-201ENST00000363269 103 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 RNU6-1284P-201ENST00000363701 100 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 SNORA80A-201ENST00000363922 136 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 RNU6-660P-201ENST00000364566 109 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 RNU6-1072P-201ENST00000384703 107 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 RNU6-443P-201ENST00000384780 107 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 U3.26-201ENST00000391236 204 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 TIMM9P1-201ENST00000436122 256 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 MTCO1P42-201ENST00000457379 726 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 RNA5SP356-201ENST00000515972 94 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 SNORA31.3-201ENST00000516029 96 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 RNA5SP320-201ENST00000516263 124 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 AL356432.3-201ENST00000568952 465 ntBASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC40Q4G0X9 AP001004.1-201ENST00000582468 324 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms