Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 U2.21-201ENST00000637295 81 ntBASIC3.23□□□□□ -1.89
VPS28Q9UK41 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS28Q9UK41 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
VPS28Q9UK41 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS28Q9UK41 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS28Q9UK41 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS28Q9UK41 RNU6-188P-201ENST00000364207 107 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 RNY4P34-201ENST00000364779 95 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 RNU6-946P-201ENST00000383878 107 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 SNORA7.4-201ENST00000384249 137 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 RPS3AP36-201ENST00000398190 775 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 RNU6-193P-201ENST00000410977 107 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 RPS12P24-201ENST00000412619 387 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 RPL32P35-201ENST00000415214 394 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 AC009414.1-201ENST00000427200 443 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 RPS15AP5-201ENST00000436276 388 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 SNORD42A-201ENST00000459584 64 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 RAP1BP2-201ENST00000478270 544 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 AC007182.2-201ENST00000489251 402 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 AP002453.2-201ENST00000533503 320 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 AC025281.1-201ENST00000567026 265 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 AC100793.4-201ENST00000613683 429 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 PISRT1-201ENST00000626175 531 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 ZNF519P1-201ENST00000449011 1626 ntBASIC3.22□□□□□ -1.89
VPS28Q9UK41 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS28Q9UK41 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
VPS28Q9UK41 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 CR848007.1-201ENST00000442354 1699 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VPS28Q9UK41 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
VPS28Q9UK41 RNU6-778P-201ENST00000363269 103 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 U8.3-201ENST00000363321 132 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 RNU1-73P-201ENST00000383971 164 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 RNU6-190P-201ENST00000384154 102 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 SNORD15B-201ENST00000384714 146 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 AC127391.1-201ENST00000411737 98 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 NDUFB4P5-201ENST00000415445 361 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 AL592045.1-201ENST00000429867 352 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 AL591212.2-201ENST00000433923 257 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 AC098826.1-201ENST00000433943 471 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 WASF1P1-201ENST00000447560 1131 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 RPS27AP10-201ENST00000496103 208 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 NACAP3-201ENST00000552100 481 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 H3F3AP1-201ENST00000559984 334 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 AC020895.1-201ENST00000595362 272 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 AL355877.2-201ENST00000603670 358 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 SEPT7P9-203ENST00000604116 343 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 AL035413.2-201ENST00000604801 525 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 OR2AS2P-201ENST00000606902 342 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 AL133173.2-201ENST00000614270 90 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 AL162274.2-201ENST00000614406 332 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 UCA1.1-201ENST00000620952 75 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 AC022079.1-201ENST00000621546 602 ntBASIC3.21□□□□□ -1.9
VPS28Q9UK41 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
VPS28Q9UK41 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
VPS28Q9UK41 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
VPS28Q9UK41 AL353743.1-202ENST00000431724 1695 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 MTND5P19-201ENST00000424872 1794 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 FARSBP1-201ENST00000435808 1778 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 SNORA20.2-201ENST00000383922 131 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 RN7SKP142-201ENST00000411236 328 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 SKA2P1-201ENST00000425592 390 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC104850.1-201ENST00000435940 476 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 AL022238.1-201ENST00000442557 355 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 AL136380.1-201ENST00000447970 162 ntBASIC3.2□□□□□ -1.9
VPS28Q9UK41 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.2□□□□□ -1.9
VPS28Q9UK41 AC093899.1-201ENST00000457984 376 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms