Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC119751.3-201ENST00000399720 670 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 RNU6-1328P-201ENST00000410938 106 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AL008987.1-201ENST00000415528 237 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 PTENP1-201ENST00000447117 1215 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC090525.1-201ENST00000479116 478 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 TBCAP3-201ENST00000512475 312 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 RN7SKP258-201ENST00000517151 304 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AP005902.1-201ENST00000521358 186 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 OR5BN1P-201ENST00000532955 829 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 HPRT1P3-201ENST00000539521 576 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC007115.1-201ENST00000546853 234 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AL133153.1-201ENST00000557756 303 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC061975.8-201ENST00000587058 721 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC008751.2-201ENST00000597885 980 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC025811.1-201ENST00000604312 472 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AL021997.1-201ENST00000605757 193 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 OR2AS2P-201ENST00000606902 342 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC069294.1-201ENST00000608397 350 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 AC017037.3-201ENST00000625016 472 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 CU459211.1-201ENST00000635667 749 ntBASIC2.59□□□□□ -1.99
ZNF540Q8NDQ6 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -2
ZNF540Q8NDQ6 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -2
ZNF540Q8NDQ6 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.59□□□□□ -2
ZNF540Q8NDQ6 Z82195.2-201ENST00000612348 18351 ntBASIC2.59□□□□□ -2
ZNF540Q8NDQ6 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 SNORA5B-201ENST00000363786 132 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 SNORA80A-201ENST00000363922 136 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 Y_RNA.192-201ENST00000363977 102 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 SNORA9.2-201ENST00000365361 133 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 SKA2P1-201ENST00000425592 390 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 GPM6BP2-201ENST00000432046 144 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 GPM6BP1-201ENST00000446387 144 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 EEF1E1P1-201ENST00000446998 430 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AP000542.1-201ENST00000448473 371 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 MTATP6P7-201ENST00000453315 681 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 CECR9-201ENST00000453421 199 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AC117440.1-201ENST00000474107 571 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AC010631.1-201ENST00000474150 156 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AC080014.1-201ENST00000496877 1201 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AC021146.8-201ENST00000507455 733 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AC116353.3-201ENST00000511215 249 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 RNA5SP82-201ENST00000516707 92 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 RNA5SP165-201ENST00000517142 115 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AC009127.3-201ENST00000570531 403 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 UBE2L4-201ENST00000587688 464 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 ELOCP29-201ENST00000588193 334 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AL356575.1-201ENST00000603008 283 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 RNU6-88P-201ENST00000606801 100 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AC011939.3-201ENST00000613686 466 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 AL158801.5-201ENST00000623123 465 ntBASIC2.58□□□□□ -2
ZNF540Q8NDQ6 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.58□□□□□ -2
ZNF540Q8NDQ6 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC092593.1-201ENST00000515413 1815 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 RNU6-1214P-201ENST00000363650 109 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AL021407.1-201ENST00000404531 386 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AL359704.1-201ENST00000411586 781 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 HMGB1P27-201ENST00000431429 603 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 CETN4P-201ENST00000432407 469 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 RPS20P5-201ENST00000434808 360 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.57□□□□□ -2
ZNF540Q8NDQ6 ST13P20-201ENST00000447996 1065 ntBASIC2.57□□□□□ -2
ZNF540Q8NDQ6 MTCO1P27-201ENST00000448269 226 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 150.6 ms