Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SNORA37-201ENST00000384504 129 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 RNU6-510P-201ENST00000391239 108 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 SNORA40C-201ENST00000391285 128 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AL645927.1-201ENST00000396783 406 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 RNA5SP38-201ENST00000410750 119 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 RNU6-607P-201ENST00000411283 108 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AL590139.1-201ENST00000416267 400 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC140479.3-201ENST00000418944 1126 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 HSPE1P1-201ENST00000421494 318 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC098614.2-201ENST00000426040 255 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 RPL23AP82-202ENST00000427528 469 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 RANP8-201ENST00000444720 713 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC091685.2-201ENST00000454924 864 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 BX284632.1-201ENST00000478218 541 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 IGLV2-34-201ENST00000490007 283 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AP002812.1-201ENST00000495378 474 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC008638.1-201ENST00000506035 866 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 RNU6ATAC24P-201ENST00000516811 135 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 SNORA31.19-201ENST00000517079 126 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AP000763.2-201ENST00000540641 163 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 MIR3934-201ENST00000579806 107 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 UBE2V2P2-201ENST00000587677 504 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 OR7E18P-201ENST00000592589 702 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC013244.1-201ENST00000604279 193 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 ATP1B3P1-201ENST00000605365 821 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC022306.2-201ENST00000617563 647 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 AC009248.2-201ENST00000619826 254 ntBASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC28AQ8IWP9 MTND5P27-201ENST00000428871 1720 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 MIR298-201ENST00000401212 88 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 RPL37P18-201ENST00000411602 243 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 RPL26P27-201ENST00000414397 437 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AC099548.1-201ENST00000421443 426 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 RPL21P109-201ENST00000422213 475 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 RPL35AP12-201ENST00000425362 338 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 MTCO3P46-201ENST00000425787 232 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AL078601.1-201ENST00000444542 271 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 RPL37P4-201ENST00000448908 268 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 NDUFB1P2-201ENST00000449477 176 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 HMGN1P12-201ENST00000499125 195 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AC008628.2-201ENST00000502605 298 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AC046134.1-201ENST00000514454 666 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 SNORA19.2-201ENST00000516013 114 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 SNORA14.1-201ENST00000516113 141 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 RN7SKP83-201ENST00000516512 178 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 RNU6-572P-201ENST00000516724 80 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AC107953.1-201ENST00000522216 297 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 CYCSP27-201ENST00000527643 293 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AC087241.2-201ENST00000535801 324 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AP001880.2-201ENST00000538233 448 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 RMST_4.1-201ENST00000616886 107 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 AL031601.2-202ENST00000622650 282 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 U2.21-201ENST00000637295 81 ntBASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC28AQ8IWP9 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
CCDC28AQ8IWP9 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CCDC28AQ8IWP9 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.4□□□□□ -1.86
CCDC28AQ8IWP9 LARP1BP1-201ENST00000506036 1359 ntBASIC3.4□□□□□ -1.86
CCDC28AQ8IWP9 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CCDC28AQ8IWP9 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 FRG1CP-201ENST00000358464 769 ntBASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 SNORD3E-201ENST00000362899 217 ntBASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 SNORD113-7-201ENST00000363762 77 ntBASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-884P-201ENST00000363889 107 ntBASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-1303P-201ENST00000364841 107 ntBASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 SNORD66.1-201ENST00000391230 76 ntBASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 SDHCP2-201ENST00000398565 501 ntBASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-1148P-201ENST00000410992 104 ntBASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 Y_RNA.623-201ENST00000411128 95 ntBASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 BX510359.2-201ENST00000417920 305 ntBASIC3.4□□□□□ -1.87
CCDC28AQ8IWP9 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms