Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC107083.1-201ENST00000439643 279 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 Z75741.1-201ENST00000446793 314 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 NDUFB9P3-201ENST00000521269 501 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 TGIF1P1-201ENST00000558095 802 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AC002545.1-201ENST00000592511 181 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AL365204.3-201ENST00000612448 685 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AC034102.8-201ENST00000615146 484 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 U4.6-201ENST00000621618 127 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 AL732372.2-225ENST00000642124 456 ntBASIC3.31□□□□□ -1.88
COL28A1Q2UY09 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL28A1Q2UY09 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 RNU1-140P-201ENST00000365040 165 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 SMIM11P1-201ENST00000369586 178 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 RNU6-701P-201ENST00000384059 107 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 RNU6-74P-201ENST00000384235 107 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 RNU6-14P-201ENST00000384630 106 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 RNU6-192P-201ENST00000391253 100 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AL138885.1-201ENST00000405921 675 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 MTHFD2P2-201ENST00000407725 247 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 RNU2-33P-201ENST00000410344 192 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 RNU2-39P-201ENST00000410604 198 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AL353678.1-201ENST00000422735 741 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AC073464.1-201ENST00000429823 534 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 RPS20P5-201ENST00000434808 360 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 RPS27P29-201ENST00000463110 252 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AC010401.1-201ENST00000463867 348 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AC126389.1-201ENST00000477436 290 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 SNORD27.1-201ENST00000516319 72 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AC011602.1-201ENST00000546484 331 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AC098848.2-201ENST00000588023 330 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AC080078.2-201ENST00000603766 501 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AC013562.2-201ENST00000611632 603 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 MTND1P37-201ENST00000636562 264 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 LRRC77P-213ENST00000637727 880 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL28A1Q2UY09 AC007785.2-201ENST00000598627 1916 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 OTUD4P1-201ENST00000237841 3067 ntBASIC3.3□□□□□ -1.88
COL28A1Q2UY09 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 AC007656.2-201ENST00000624902 4547 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 AC022336.2-201ENST00000568966 2538 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 Y_RNA.3-201ENST00000362331 103 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 RNU6-283P-201ENST00000364788 107 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 RNU6-805P-201ENST00000365643 106 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 RNU6-55P-201ENST00000411092 107 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 RNU6-954P-201ENST00000411355 107 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 TMEM167AP1-201ENST00000423409 219 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 TIMM9P3-201ENST00000428659 274 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 SNRPEP4-201ENST00000435815 279 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 NEFMP1-201ENST00000443423 1006 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 AC006445.1-201ENST00000491925 405 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 RPL9P6-201ENST00000492764 598 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 AC117522.1-201ENST00000509821 380 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 TTC39CP1-201ENST00000512513 755 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 RNU6-1282P-201ENST00000516735 96 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 AL359212.1-201ENST00000556608 614 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 TRAV28-201ENST00000557548 323 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 AC068790.6-201ENST00000602558 258 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 AC146944.4-201ENST00000602697 718 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 AC007363.1-201ENST00000604736 620 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms