Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RPS26P47-201ENST00000427219 348 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.65□□□□□ -1.5
COL9A1P20849 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.65□□□□□ -1.5
COL9A1P20849 AC091167.1-201ENST00000492017 396 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 AP004607.1-201ENST00000524456 203 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 AC013791.1-201ENST00000616619 62 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 SNORA43.4-201ENST00000629559 138 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 AC073136.1-201ENST00000449426 2884 ntBASIC5.65□□□□□ -1.5
COL9A1P20849 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL9A1P20849 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL9A1P20849 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
COL9A1P20849 AP000432.2-201ENST00000624164 2048 ntBASIC5.65□□□□□ -1.51
COL9A1P20849 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL9A1P20849 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
COL9A1P20849 MTND5P35-201ENST00000557537 1720 ntBASIC5.65□□□□□ -1.51
COL9A1P20849 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
COL9A1P20849 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL9A1P20849 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.64□□□□□ -1.51
COL9A1P20849 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC5.64□□□□□ -1.51
COL9A1P20849 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.64□□□□□ -1.51
COL9A1P20849 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 U8.7-201ENST00000364940 136 ntBASIC5.64□□□□□ -1.51
COL9A1P20849 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 RNU6-643P-201ENST00000384018 107 ntBASIC5.64□□□□□ -1.51
COL9A1P20849 MIR616-201ENST00000385293 97 ntBASIC5.64□□□□□ -1.51
COL9A1P20849 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC5.64□□□□□ -1.51
COL9A1P20849 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC5.64□□□□□ -1.51
COL9A1P20849 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC5.64□□□□□ -1.51
COL9A1P20849 RNA5SP143-201ENST00000516936 115 ntBASIC5.64□□□□□ -1.51
COL9A1P20849 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.64□□□□□ -1.51
COL9A1P20849 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 AC006133.1-201ENST00000617106 264 ntBASIC5.64□□□□□ -1.51
COL9A1P20849 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC5.64□□□□□ -1.51
COL9A1P20849 MESTIT1_1.1-201ENST00000618871 140 ntBASIC5.64□□□□□ -1.51
COL9A1P20849 AC074101.1-201ENST00000637861 241 ntBASIC5.64□□□□□ -1.51
COL9A1P20849 AL596275.2-208ENST00000641192 594 ntBASIC5.64□□□□□ -1.51
COL9A1P20849 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC5.64□□□□□ -1.51
COL9A1P20849 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL9A1P20849 AL731532.1-201ENST00000623972 4236 ntBASIC5.64□□□□□ -1.51
COL9A1P20849 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
COL9A1P20849 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.64□□□□□ -1.51
COL9A1P20849 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL9A1P20849 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.64□□□□□ -1.51
COL9A1P20849 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL9A1P20849 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL9A1P20849 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL9A1P20849 TTC41P-205ENST00000551270 3963 ntBASIC5.63□□□□□ -1.51
COL9A1P20849 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL9A1P20849 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL9A1P20849 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL9A1P20849 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL9A1P20849 SNORA73.1-201ENST00000363107 205 ntBASIC5.63□□□□□ -1.51
COL9A1P20849 Y_RNA.179-201ENST00000363844 90 ntBASIC5.63□□□□□ -1.51
COL9A1P20849 SNORA16A-201ENST00000384342 137 ntBASIC5.63□□□□□ -1.51
COL9A1P20849 AL158823.1-201ENST00000418441 478 ntBASIC5.63□□□□□ -1.51
COL9A1P20849 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC5.63□□□□□ -1.51
COL9A1P20849 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC5.63□□□□□ -1.51
COL9A1P20849 AC136628.3-201ENST00000521868 290 ntBASIC5.63□□□□□ -1.51
COL9A1P20849 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL9A1P20849 MIR4311-201ENST00000580794 100 ntBASIC5.63□□□□□ -1.51
COL9A1P20849 AC006380.1-201ENST00000603598 186 ntBASIC5.63□□□□□ -1.51
COL9A1P20849 AL391903.3-201ENST00000612158 163 ntBASIC5.63□□□□□ -1.51
COL9A1P20849 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL9A1P20849 AC134026.1-201ENST00000623249 2239 ntBASIC5.63□□□□□ -1.51
COL9A1P20849 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL9A1P20849 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC5.63□□□□□ -1.51
COL9A1P20849 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL9A1P20849 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL9A1P20849 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.62□□□□□ -1.51
COL9A1P20849 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL9A1P20849 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.62□□□□□ -1.51
COL9A1P20849 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
COL9A1P20849 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL9A1P20849 SDAD1P1-202ENST00000524156 2051 ntBASIC5.62□□□□□ -1.51
COL9A1P20849 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
COL9A1P20849 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL9A1P20849 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5.62□□□□□ -1.51
COL9A1P20849 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL9A1P20849 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL9A1P20849 Y_RNA.329-201ENST00000365209 107 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms