Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 AC103996.1-201ENST00000555468 102 ntBASIC5.32□□□□□ -1.56
NOD1Q9Y239 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NOD1Q9Y239 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.32□□□□□ -1.56
NOD1Q9Y239 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.32□□□□□ -1.56
NOD1Q9Y239 MAPK10-328ENST00000641553 4009 ntBASIC5.32□□□□□ -1.56
NOD1Q9Y239 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
NOD1Q9Y239 Z75746.1-201ENST00000440243 2080 ntBASIC5.32□□□□□ -1.56
NOD1Q9Y239 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
NOD1Q9Y239 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
NOD1Q9Y239 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
NOD1Q9Y239 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
NOD1Q9Y239 DEFB108F-201ENST00000344638 222 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 SNORD27-201ENST00000363981 72 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 SNORD14B-201ENST00000364533 90 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 Y_RNA.416-201ENST00000384014 113 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 RNU6-629P-201ENST00000384061 103 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 MIR548H3-201ENST00000408771 118 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 NDUFB1P2-201ENST00000449477 176 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 AC098869.1-201ENST00000481627 292 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 RPL30P10-201ENST00000488148 337 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 RN7SKP122-201ENST00000515923 296 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 RRN3P3-201ENST00000549207 578 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 AL590392.1-201ENST00000604960 446 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 AL022401.1-201ENST00000619498 108 ntBASIC5.31□□□□□ -1.56
NOD1Q9Y239 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
NOD1Q9Y239 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
NOD1Q9Y239 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
NOD1Q9Y239 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
NOD1Q9Y239 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
NOD1Q9Y239 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
NOD1Q9Y239 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
NOD1Q9Y239 Y_RNA.20-201ENST00000362479 113 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 SNORA71.2-201ENST00000364941 134 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 AL022722.2-201ENST00000402519 180 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 RNU2-25P-201ENST00000411041 191 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 Y_RNA.623-201ENST00000411128 95 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 AL117339.3-201ENST00000418733 162 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 MTND3P9-201ENST00000429526 346 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 BX276092.6-201ENST00000430476 250 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 BX276092.8-201ENST00000455722 250 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 AC091868.1-201ENST00000508746 304 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 AC074250.1-201ENST00000511117 192 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 Y_RNA.719-201ENST00000517156 106 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 AC008121.1-201ENST00000603244 268 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 AC009318.2-201ENST00000610917 651 ntBASIC5.3□□□□□ -1.56
NOD1Q9Y239 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
NOD1Q9Y239 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.3□□□□□ -1.56
NOD1Q9Y239 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
NOD1Q9Y239 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.29□□□□□ -1.56
NOD1Q9Y239 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.29□□□□□ -1.56
NOD1Q9Y239 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.29□□□□□ -1.56
NOD1Q9Y239 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
NOD1Q9Y239 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.29□□□□□ -1.56
NOD1Q9Y239 SNORD50.1-201ENST00000362987 71 ntBASIC5.29□□□□□ -1.56
NOD1Q9Y239 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
NOD1Q9Y239 RNU1-82P-201ENST00000390851 165 ntBASIC5.29□□□□□ -1.56
NOD1Q9Y239 RNA5SP397-201ENST00000391323 118 ntBASIC5.29□□□□□ -1.56
NOD1Q9Y239 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC5.29□□□□□ -1.56
NOD1Q9Y239 U3.32-201ENST00000408116 212 ntBASIC5.29□□□□□ -1.56
NOD1Q9Y239 RN7SKP267-201ENST00000410381 285 ntBASIC5.29□□□□□ -1.56
NOD1Q9Y239 RNU6-1203P-201ENST00000410703 110 ntBASIC5.29□□□□□ -1.56
NOD1Q9Y239 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
NOD1Q9Y239 FABP5P15-201ENST00000453566 214 ntBASIC5.29□□□□□ -1.56
NOD1Q9Y239 RPL21P13-201ENST00000488305 481 ntBASIC5.29□□□□□ -1.56
NOD1Q9Y239 AK3P2-201ENST00000507976 429 ntBASIC5.29□□□□□ -1.56
NOD1Q9Y239 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.29□□□□□ -1.56
NOD1Q9Y239 RNU6-182P-201ENST00000516970 105 ntBASIC5.29□□□□□ -1.56
NOD1Q9Y239 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms