Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 snoU13.4-201ENST00000458916 104 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 RN7SL197P-201ENST00000466981 299 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AC092754.1-201ENST00000472975 479 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AKIRIN2P1-201ENST00000505898 352 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 RNU6-1114P-201ENST00000516022 107 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 IGHVII-62-1-201ENST00000519283 235 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AP004607.1-201ENST00000524456 203 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AC209154.1-201ENST00000582156 337 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AC010928.2-201ENST00000588017 287 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 U6.99-201ENST00000637524 83 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 AC008568.2-201ENST00000623862 2313 ntBASIC5.51□□□□□ -1.53
LIMD1Q9UGP4 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 RNU6-222P-201ENST00000362438 107 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 RNU6-879P-201ENST00000364328 108 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 Y_RNA.291-201ENST00000364886 113 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 SNORD113-1-201ENST00000365321 69 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 MIR124-3-201ENST00000384866 87 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 U3.37-201ENST00000408528 213 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 RNU6-1245P-201ENST00000411130 106 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 COX6CP10-201ENST00000416832 224 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 EIF1P2-201ENST00000428233 350 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 SNRPEP9-201ENST00000436794 238 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 AC005002.2-201ENST00000438228 269 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 HMGB1P22-201ENST00000505315 124 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 Y_RNA.683-201ENST00000516508 93 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 AK6P2-201ENST00000549020 471 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 MIR4270-201ENST00000581799 70 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 AC024153.1-201ENST00000603103 365 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 MZT1P2-201ENST00000604387 248 ntBASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.5□□□□□ -1.53
LIMD1Q9UGP4 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 AC118273.1-201ENST00000525324 3006 ntBASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 RNY4P28-201ENST00000365281 93 ntBASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 AL390729.2-201ENST00000416137 156 ntBASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 Z82210.1-201ENST00000440037 231 ntBASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 AC009237.8-201ENST00000445492 379 ntBASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 TPT1P12-201ENST00000448968 492 ntBASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 NUTF2P7-201ENST00000453086 375 ntBASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 HMGB3P16-201ENST00000508037 287 ntBASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 AL359219.2-201ENST00000555184 348 ntBASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 MIR548AI-201ENST00000579940 88 ntBASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 AC010632.3-201ENST00000611377 369 ntBASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.49□□□□□ -1.53
LIMD1Q9UGP4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 AC083837.1-201ENST00000565297 2994 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 RNU6-1159P-201ENST00000362933 107 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 RNA5SP240-201ENST00000365355 128 ntBASIC5.48□□□□□ -1.53
LIMD1Q9UGP4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms