Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
VSX1Q9NZR4 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VSX1Q9NZR4 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 Y_RNA.135-201ENST00000363439 95 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 RNA5SP447-201ENST00000363749 119 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 SNORA37-201ENST00000384504 129 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 MIR301A-201ENST00000385261 86 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AL669831.1-202ENST00000428504 417 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 RPS3AP52-201ENST00000435639 297 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 MTND1P17-201ENST00000448961 204 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 RNU7-152P-201ENST00000458982 64 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 VN1R17P-201ENST00000472048 1090 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 RN7SL481P-201ENST00000477764 299 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AC108860.1-201ENST00000484521 383 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AC008958.1-201ENST00000511047 682 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 RNU6-1088P-201ENST00000516850 104 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 Y_RNA.718-201ENST00000517110 102 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AC069113.1-201ENST00000517763 267 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AC087854.1-201ENST00000519706 414 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AC234771.5-201ENST00000600161 514 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 DPPA3P3-201ENST00000603842 430 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AC012603.1-201ENST00000606424 528 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AP002826.1-201ENST00000608835 315 ntBASIC3.72□□□□□ -1.81
VSX1Q9NZR4 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
VSX1Q9NZR4 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
VSX1Q9NZR4 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 RNU6-43P-201ENST00000384302 107 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 RNU6-45P-201ENST00000384471 107 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 HSPE1P8-201ENST00000406997 288 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 MIR548F5-201ENST00000408421 86 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 BX842559.1-201ENST00000419615 532 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 RPL23AP46-201ENST00000438548 490 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AL136097.1-201ENST00000456945 913 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 Y_RNA.639-201ENST00000458981 102 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 RNU7-170P-201ENST00000459303 61 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AC010285.1-201ENST00000470580 392 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AC109327.1-201ENST00000471666 403 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 RPS27P27-201ENST00000498779 255 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 MTND5P5-201ENST00000503764 376 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 HMGB1P22-201ENST00000505315 124 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AC023141.12-201ENST00000512399 199 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 APOOP4-201ENST00000513530 597 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 SCARNA15.2-201ENST00000516409 127 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 IGKV2-23-201ENST00000518729 323 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AC093249.1-201ENST00000567049 203 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 MIR4330-201ENST00000579077 105 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 HMGB1P50-201ENST00000605814 607 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AL627309.6-201ENST00000606857 840 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AL138726.1-201ENST00000614873 333 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 FAM35DP-201ENST00000323387 2712 ntBASIC3.71□□□□□ -1.82
VSX1Q9NZR4 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.71□□□□□ -1.82
VSX1Q9NZR4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC126755.2-208ENST00000327792 462 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AC138969.1-213ENST00000331436 462 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RNU6-562P-201ENST00000362731 107 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RNU6-288P-201ENST00000363690 104 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 Y_RNA.187-201ENST00000363918 113 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 SNORA7.2-201ENST00000364446 145 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RNU6-629P-201ENST00000384061 103 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 RNY4P36-201ENST00000391116 96 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AL391417.1-201ENST00000404100 426 ntBASIC3.7□□□□□ -1.82
VSX1Q9NZR4 AL139397.2-201ENST00000404529 772 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms