Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP44Q9H0E7 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.55□□□□□ -1.84
USP44Q9H0E7 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP44Q9H0E7 TEX21P-201ENST00000447107 1476 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP44Q9H0E7 RNU1-112P-201ENST00000364401 164 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP44Q9H0E7 RNU6-741P-201ENST00000383889 107 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 RNU6-297P-201ENST00000384636 107 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 RN7SKP140-201ENST00000411196 284 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 ZNF90P2-204ENST00000419323 1075 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 AL451054.2-201ENST00000420896 202 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 AC020550.1-201ENST00000447385 163 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 SSXP4-201ENST00000451349 245 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 AP004217.1-201ENST00000480579 346 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP44Q9H0E7 RNU6-390P-201ENST00000516259 103 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 AC022690.1-201ENST00000526681 550 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 AP003122.4-201ENST00000530980 758 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 AC091304.9-201ENST00000612091 226 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 AC090132.2-201ENST00000615881 347 ntBASIC3.54□□□□□ -1.84
USP44Q9H0E7 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.54□□□□□ -1.84
USP44Q9H0E7 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP44Q9H0E7 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
USP44Q9H0E7 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
USP44Q9H0E7 AC093908.1-201ENST00000623125 8092 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
USP44Q9H0E7 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
USP44Q9H0E7 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.53□□□□□ -1.84
USP44Q9H0E7 HSPE1P11-201ENST00000339579 310 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
USP44Q9H0E7 RNY1P12-201ENST00000364251 105 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 RNU4-75P-201ENST00000364621 146 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 Y_RNA.359-201ENST00000365498 102 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.53□□□□□ -1.84
USP44Q9H0E7 MIR512-1-201ENST00000384913 84 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 RPS4XP3-201ENST00000398541 413 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 DEFB108C-201ENST00000400154 252 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 CDK8P2-201ENST00000415020 547 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
USP44Q9H0E7 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.53□□□□□ -1.84
USP44Q9H0E7 NEK4P1-201ENST00000433383 879 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 RPS20P5-201ENST00000434808 360 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 AC073614.1-201ENST00000438690 650 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.53□□□□□ -1.84
USP44Q9H0E7 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.53□□□□□ -1.84
USP44Q9H0E7 CBWD4P-201ENST00000445695 655 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 AL590664.1-201ENST00000448065 339 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.53□□□□□ -1.84
USP44Q9H0E7 AC087588.1-201ENST00000462203 316 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 AL049874.1-201ENST00000489560 388 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 AC010587.1-201ENST00000505809 469 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 Y_RNA.655-201ENST00000515919 96 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 RNU6-927P-201ENST00000516199 100 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 RN7SKP258-201ENST00000517151 304 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.53□□□□□ -1.84
USP44Q9H0E7 HMGN1P30-201ENST00000589286 268 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 SEPT7P9-203ENST00000604116 343 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 AC090578.1-201ENST00000604955 591 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 AL391813.2-201ENST00000609113 322 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 AC108747.1-201ENST00000609508 535 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 AL020991.1-201ENST00000612314 373 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.53□□□□□ -1.84
USP44Q9H0E7 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.53□□□□□ -1.84
USP44Q9H0E7 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
USP44Q9H0E7 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP44Q9H0E7 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP44Q9H0E7 ZNF826P-207ENST00000622273 1910 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP44Q9H0E7 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 RNU6-623P-201ENST00000363143 105 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 RNY4P16-201ENST00000364768 94 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 RNU6-348P-201ENST00000384386 107 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 SNORD116-4-201ENST00000384733 96 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
USP44Q9H0E7 AL451074.5-201ENST00000415894 435 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 AL589872.1-201ENST00000426602 288 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.52□□□□□ -1.85
USP44Q9H0E7 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.52□□□□□ -1.85
USP44Q9H0E7 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms