Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 AC082651.2-201ENST00000496833 166 ntBASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 AC104619.4-201ENST00000510773 249 ntBASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 RNU6-445P-201ENST00000516949 107 ntBASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 AP003072.2-201ENST00000527756 676 ntBASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 AC005498.1-201ENST00000592125 465 ntBASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 AC012468.1-201ENST00000604888 430 ntBASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 MIR15A-201ENST00000607334 83 ntBASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 AC012409.4-201ENST00000612923 249 ntBASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 U6.114-201ENST00000636407 96 ntBASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HERPUD2Q9BSE4 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
HERPUD2Q9BSE4 AP003122.5-201ENST00000527668 3766 ntBASIC3.59□□□□□ -1.84
HERPUD2Q9BSE4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
HERPUD2Q9BSE4 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 SNORA71.3-201ENST00000362582 128 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 RNA5SP119-201ENST00000362715 117 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 RNU6-778P-201ENST00000363269 103 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 RNA5SP197-201ENST00000363357 119 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 RNU6-1119P-201ENST00000384349 108 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 Y_RNA.534-201ENST00000384599 112 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 MIR7-3-201ENST00000384898 110 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 RN7SKP285-201ENST00000410137 318 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 RPS29P4-201ENST00000414733 161 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AL353729.1-201ENST00000425044 720 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 TRIAP1P1-201ENST00000427062 225 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 MTCO3P5-201ENST00000433620 714 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 MTATP6P16-201ENST00000434543 526 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 DPPA3P1-201ENST00000448050 469 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC093392.2-201ENST00000450682 337 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC022364.2-201ENST00000457963 554 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 RNU6-123P-201ENST00000516163 102 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 SUB1P1-201ENST00000524415 382 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AP001646.1-201ENST00000527936 915 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC005476.1-201ENST00000554427 397 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 H3F3AP1-201ENST00000559984 334 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC025281.1-201ENST00000567026 265 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC010653.1-201ENST00000571108 881 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AL355877.2-201ENST00000603670 358 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 U3.45-201ENST00000607547 219 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 SNORD39.4-201ENST00000620099 78 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC025034.2-201ENST00000623264 286 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AP003355.3-201ENST00000623465 114 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 U2.21-201ENST00000637295 81 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 U6.99-201ENST00000637524 83 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AC032011.1-201ENST00000611703 1549 ntBASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
HERPUD2Q9BSE4 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 RNU6-282P-201ENST00000365357 103 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 SNORA4.3-201ENST00000365564 137 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 RNU6-658P-201ENST00000384606 106 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 RNA5SP31-201ENST00000411144 127 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 RNA5SP111-201ENST00000411386 101 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 AL663109.1-201ENST00000411498 844 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 USP9YP6-201ENST00000413550 854 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 Z99755.1-201ENST00000414048 380 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 AL158156.1-201ENST00000422509 473 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 RPL7P46-201ENST00000425129 740 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 SKA2P1-201ENST00000425592 390 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 CYCSP4-201ENST00000429682 331 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 HMGN2P31-201ENST00000432430 273 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 RPS15AP5-201ENST00000436276 388 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 MTCYBP1-201ENST00000454315 1119 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 RPS3AP17-201ENST00000472594 777 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 RPS27AP10-201ENST00000496103 208 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 AC109927.2-201ENST00000506416 303 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 RNU6-1315P-201ENST00000517187 99 ntBASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.57□□□□□ -1.84
HERPUD2Q9BSE4 AC022634.1-201ENST00000520765 532 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 147.9 ms