Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 RNU6-512P-201ENST00000364438 103 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 Y_RNA.314-201ENST00000365114 102 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 RNU6-596P-201ENST00000365395 98 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 U3.15-201ENST00000365398 212 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 SNORA63.7-201ENST00000365579 123 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 RHOT1P2-201ENST00000366423 333 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 SNORA56-201ENST00000383966 129 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 RNU6-790P-201ENST00000384479 105 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 MIR124-3-201ENST00000384866 87 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 MT-TR-201ENST00000387439 65 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 RNU6-1109P-201ENST00000391187 107 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 SDHCP2-201ENST00000398565 501 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 RN7SKP58-201ENST00000411010 305 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 BX276092.3-201ENST00000424182 230 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 DNAJC19P7-201ENST00000428811 344 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 RPL23AP93-201ENST00000440847 484 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 DAP3P1-201ENST00000441522 278 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AC108860.1-201ENST00000484521 383 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AC011005.2-201ENST00000487324 359 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AL049874.1-201ENST00000489560 388 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AC105758.1-201ENST00000506038 399 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 RNU6-1315P-201ENST00000517187 99 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AC007991.1-201ENST00000522680 631 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AC022968.1-201ENST00000567372 442 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 FAM60BP-201ENST00000578364 658 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AL355297.3-201ENST00000604082 446 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 AC107294.1-201ENST00000609524 467 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 MIR6798-201ENST00000612887 67 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 MAPK10-303ENST00000641324 3959 ntBASIC4.29□□□□□ -1.72
PTCHD1Q96NR3 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AL592182.3-201ENST00000642132 3304 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AL356489.2-201ENST00000566968 3528 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 RNU6-173P-201ENST00000364215 104 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 Y_RNA.380-201ENST00000365663 111 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 MIR301A-201ENST00000385261 86 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 LAP3P1-201ENST00000403648 294 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 RNU6-174P-201ENST00000410406 106 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 RPL23AP1-201ENST00000428990 471 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 CECR9-201ENST00000453421 199 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 RPL23AP31-201ENST00000456160 467 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AL445433.1-201ENST00000457507 257 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 RPL17P19-201ENST00000489069 552 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AC022493.1-201ENST00000492984 337 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AC022616.4-201ENST00000522985 181 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AC015912.2-201ENST00000571053 181 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 MIR1273C-201ENST00000578669 77 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AC002545.1-201ENST00000592511 181 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AC068790.4-201ENST00000602474 263 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 AC008745.1-201ENST00000604064 271 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
PTCHD1Q96NR3 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 RNU1-94P-201ENST00000362627 173 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 Y_RNA.152-201ENST00000363578 100 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 RNA5SP235-201ENST00000365411 114 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 RNU6-629P-201ENST00000384061 103 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 RNU6-784P-201ENST00000384330 106 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 SNORD96B-201ENST00000386148 79 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 RNU6-847P-201ENST00000411115 108 ntBASIC4.27□□□□□ -1.73
PTCHD1Q96NR3 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms