Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 MIR3976-201ENST00000606807 139 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 MIR6716-201ENST00000613413 80 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 AL445567.2-201ENST00000618935 498 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.76□□□□□ -1.65
SOX4Q06945 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX4Q06945 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
SOX4Q06945 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.76□□□□□ -1.65
SOX4Q06945 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SOX4Q06945 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SOX4Q06945 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SOX4Q06945 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SOX4Q06945 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SOX4Q06945 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
SOX4Q06945 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.76□□□□□ -1.65
SOX4Q06945 ZNF285B-201ENST00000561698 1767 ntBASIC4.76□□□□□ -1.65
SOX4Q06945 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX4Q06945 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.75□□□□□ -1.65
SOX4Q06945 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX4Q06945 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX4Q06945 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX4Q06945 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX4Q06945 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SOX4Q06945 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX4Q06945 RNU1-132P-201ENST00000364300 164 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.75□□□□□ -1.65
SOX4Q06945 RNU6-933P-201ENST00000384424 107 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 MIR3065-201ENST00000390137 79 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 U3.42-201ENST00000408746 214 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 RNU6-121P-201ENST00000410525 99 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 RNU2-25P-201ENST00000411041 191 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 RNU6-607P-201ENST00000411283 108 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 RNU2-71P-201ENST00000411395 189 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.75□□□□□ -1.65
SOX4Q06945 RPS26P47-201ENST00000427219 348 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 AC008065.1-201ENST00000428525 348 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC4.75□□□□□ -1.65
SOX4Q06945 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.75□□□□□ -1.65
SOX4Q06945 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.75□□□□□ -1.65
SOX4Q06945 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.75□□□□□ -1.65
SOX4Q06945 PRDX3P3-201ENST00000447765 522 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 NDUFB1P2-201ENST00000449477 176 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 EIF4A1P11-201ENST00000451239 222 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 NUTF2P7-201ENST00000453086 375 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 AC108751.2-201ENST00000469993 231 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 RNU6-1095P-201ENST00000516148 108 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 AC034114.1-201ENST00000520293 285 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 SNRPGP16-201ENST00000533275 226 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 LRRC37A5P-203ENST00000580181 585 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 AC012669.1-201ENST00000603209 283 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 AC073410.2-201ENST00000603240 332 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 AC010900.2-201ENST00000604508 210 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.75□□□□□ -1.65
SOX4Q06945 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 MIR4496-201ENST00000635896 61 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC4.75□□□□□ -1.65
SOX4Q06945 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.75□□□□□ -1.65
SOX4Q06945 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
SOX4Q06945 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX4Q06945 AC005332.5-201ENST00000591222 2919 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 AP001642.1-201ENST00000624727 2117 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 OR51H2P-202ENST00000641424 3046 ntBASIC4.75□□□□□ -1.65
SOX4Q06945 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX4Q06945 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SOX4Q06945 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.74□□□□□ -1.65
SOX4Q06945 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX4Q06945 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
SOX4Q06945 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX4Q06945 RNU6-774P-201ENST00000363238 107 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 RNU6-1155P-201ENST00000363554 107 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 RNU6-263P-201ENST00000363811 107 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 RNU6-280P-201ENST00000364145 104 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX4Q06945 Y_RNA.533-201ENST00000384596 114 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 MIR628-201ENST00000385229 95 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 MTCO2P33-201ENST00000402100 465 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 AL513475.1-201ENST00000406602 315 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 CYCSP33-201ENST00000414485 327 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SOX4Q06945 SSXP9-201ENST00000417503 292 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 AC092423.1-201ENST00000430165 186 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 HMGB1P27-201ENST00000431429 603 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 GEMIN8P3-201ENST00000445417 720 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 RPS11P1-201ENST00000451072 473 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 AL139109.1-201ENST00000455491 297 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.74□□□□□ -1.65
SOX4Q06945 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SOX4Q06945 RN7SL41P-201ENST00000476144 297 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 HMGN2P13-201ENST00000476476 274 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 AC098869.1-201ENST00000481627 292 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 AC091167.1-201ENST00000492017 396 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.74□□□□□ -1.65
SOX4Q06945 AC008958.1-201ENST00000511047 682 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 RNU6-911P-201ENST00000516523 104 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 RNU5B-3P-201ENST00000516601 115 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.74□□□□□ -1.65
SOX4Q06945 TRAV32-201ENST00000553993 340 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC4.74□□□□□ -1.65
SOX4Q06945 MIR548AC-201ENST00000585049 88 ntBASIC4.74□□□□□ -1.65
SOX4Q06945 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.74□□□□□ -1.65
SOX4Q06945 AL158827.2-201ENST00000602494 330 ntBASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms