Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AP001330.4-201ENST00000604350 154 ntBASIC3.13□□□□□ -1.91
MSH3P20585 AL136363.1-201ENST00000605349 337 ntBASIC3.13□□□□□ -1.91
MSH3P20585 AC126118.1-201ENST00000607744 628 ntBASIC3.13□□□□□ -1.91
MSH3P20585 AC004696.1-201ENST00000614345 607 ntBASIC3.13□□□□□ -1.91
MSH3P20585 U4.5-201ENST00000617137 123 ntBASIC3.13□□□□□ -1.91
MSH3P20585 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
MSH3P20585 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
MSH3P20585 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
MSH3P20585 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.12□□□□□ -1.91
MSH3P20585 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
MSH3P20585 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.12□□□□□ -1.91
MSH3P20585 OR4G2P-201ENST00000328113 903 ntBASIC3.12□□□□□ -1.91
MSH3P20585 MIR208A-201ENST00000362287 71 ntBASIC3.12□□□□□ -1.91
MSH3P20585 RNY1P12-201ENST00000364251 105 ntBASIC3.12□□□□□ -1.91
MSH3P20585 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.12□□□□□ -1.91
MSH3P20585 SNORA23-201ENST00000365128 182 ntBASIC3.12□□□□□ -1.91
MSH3P20585 RNU6-76P-201ENST00000384060 104 ntBASIC3.12□□□□□ -1.91
MSH3P20585 MIR181A1-201ENST00000385026 110 ntBASIC3.12□□□□□ -1.91
MSH3P20585 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
MSH3P20585 MTCO3P40-201ENST00000392516 676 ntBASIC3.12□□□□□ -1.91
MSH3P20585 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.12□□□□□ -1.91
MSH3P20585 RPL17P50-201ENST00000396131 546 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AL136372.1-201ENST00000403060 228 ntBASIC3.12□□□□□ -1.91
MSH3P20585 RNU4-55P-201ENST00000410731 137 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.12□□□□□ -1.91
MSH3P20585 ISCA1P1-201ENST00000426679 387 ntBASIC3.12□□□□□ -1.91
MSH3P20585 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.12□□□□□ -1.91
MSH3P20585 MTCO2P19-201ENST00000427513 598 ntBASIC3.12□□□□□ -1.91
MSH3P20585 MTATP6P4-201ENST00000427725 675 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC073464.1-201ENST00000429823 534 ntBASIC3.12□□□□□ -1.91
MSH3P20585 FCF1P1-201ENST00000432690 571 ntBASIC3.12□□□□□ -1.91
MSH3P20585 HIGD1AP11-201ENST00000438361 280 ntBASIC3.12□□□□□ -1.91
MSH3P20585 SSXP4-201ENST00000451349 245 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC007182.2-201ENST00000489251 402 ntBASIC3.12□□□□□ -1.91
MSH3P20585 RN7SL504P-201ENST00000494496 287 ntBASIC3.12□□□□□ -1.91
MSH3P20585 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
MSH3P20585 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.12□□□□□ -1.91
MSH3P20585 AF213884.2-201ENST00000510417 903 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.12□□□□□ -1.91
MSH3P20585 AC105914.1-201ENST00000511798 226 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC011352.1-201ENST00000512300 793 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.12□□□□□ -1.91
MSH3P20585 RNU1-61P-201ENST00000516107 151 ntBASIC3.12□□□□□ -1.91
MSH3P20585 SNORA31.8-201ENST00000516327 108 ntBASIC3.12□□□□□ -1.91
MSH3P20585 MTND4LP26-201ENST00000518144 282 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC090572.1-201ENST00000519251 160 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC100870.1-201ENST00000522035 505 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC011979.2-201ENST00000527568 352 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.12□□□□□ -1.91
MSH3P20585 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.12□□□□□ -1.91
MSH3P20585 AC123904.3-201ENST00000547218 814 ntBASIC3.12□□□□□ -1.91
MSH3P20585 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.12□□□□□ -1.91
MSH3P20585 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.12□□□□□ -1.91
MSH3P20585 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.12□□□□□ -1.91
MSH3P20585 BDH2P1-201ENST00000602288 736 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC004067.1-201ENST00000608733 700 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC092954.2-201ENST00000609103 430 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.12□□□□□ -1.91
MSH3P20585 AL110115.1-201ENST00000614396 364 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AL359880.1-201ENST00000621879 266 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC099506.2-201ENST00000623074 221 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AC018692.3-201ENST00000623929 123 ntBASIC3.12□□□□□ -1.91
MSH3P20585 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.12□□□□□ -1.91
MSH3P20585 AC073346.2-201ENST00000624724 2058 ntBASIC3.12□□□□□ -1.91
MSH3P20585 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.11□□□□□ -1.91
MSH3P20585 CR848007.1-201ENST00000442354 1699 ntBASIC3.11□□□□□ -1.91
MSH3P20585 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.11□□□□□ -1.91
MSH3P20585 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
MSH3P20585 Y_RNA.1-201ENST00000352915 104 ntBASIC3.11□□□□□ -1.91
MSH3P20585 SNORD56.2-201ENST00000363242 71 ntBASIC3.11□□□□□ -1.91
MSH3P20585 U3.6-201ENST00000363622 211 ntBASIC3.11□□□□□ -1.91
MSH3P20585 Y_RNA.159-201ENST00000363674 87 ntBASIC3.11□□□□□ -1.91
MSH3P20585 DYNLT3P1-201ENST00000378574 347 ntBASIC3.11□□□□□ -1.91
MSH3P20585 CALM2P3-201ENST00000400429 449 ntBASIC3.11□□□□□ -1.91
MSH3P20585 RPL21P24-201ENST00000413752 448 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH3P20585 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH3P20585 EIF1P1-201ENST00000421436 341 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AC006946.1-201ENST00000429106 328 ntBASIC3.11□□□□□ -1.91
MSH3P20585 RPL23AP69-201ENST00000431134 458 ntBASIC3.11□□□□□ -1.91
MSH3P20585 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH3P20585 AL353705.1-201ENST00000433468 480 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AC024082.2-201ENST00000434771 238 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH3P20585 RPL26P6-201ENST00000440913 438 ntBASIC3.11□□□□□ -1.91
MSH3P20585 MTCO3P45-201ENST00000443036 613 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH3P20585 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH3P20585 RPL23AP31-201ENST00000456160 467 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.11□□□□□ -1.91
MSH3P20585 RPL21P8-201ENST00000465083 535 ntBASIC3.11□□□□□ -1.91
MSH3P20585 RN7SL283P-201ENST00000489055 303 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AC023194.1-201ENST00000493084 308 ntBASIC3.11□□□□□ -1.91
MSH3P20585 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH3P20585 SCARNA24.1-201ENST00000516465 137 ntBASIC3.11□□□□□ -1.91
MSH3P20585 RNU6-314P-201ENST00000516574 104 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AC128657.1-201ENST00000549459 145 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC3.11□□□□□ -1.91
MSH3P20585 ARL2BPP2-201ENST00000550907 489 ntBASIC3.11□□□□□ -1.91
MSH3P20585 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms