Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 RNU6-559P-201ENST00000516151 98 ntBASIC3.83□□□□□ -1.8
PROM1O43490 RNU6-1073P-201ENST00000517182 106 ntBASIC3.83□□□□□ -1.8
PROM1O43490 IGKV2D-23-201ENST00000518179 286 ntBASIC3.83□□□□□ -1.8
PROM1O43490 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.83□□□□□ -1.8
PROM1O43490 RANP3-201ENST00000530970 276 ntBASIC3.83□□□□□ -1.8
PROM1O43490 AL137161.1-201ENST00000532231 390 ntBASIC3.83□□□□□ -1.8
PROM1O43490 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.83□□□□□ -1.8
PROM1O43490 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.83□□□□□ -1.8
PROM1O43490 AC126177.3-201ENST00000551839 688 ntBASIC3.83□□□□□ -1.8
PROM1O43490 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.83□□□□□ -1.8
PROM1O43490 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.83□□□□□ -1.8
PROM1O43490 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.83□□□□□ -1.8
PROM1O43490 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.83□□□□□ -1.8
PROM1O43490 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PROM1O43490 AC024220.1-201ENST00000603675 484 ntBASIC3.83□□□□□ -1.8
PROM1O43490 AP001330.4-201ENST00000604350 154 ntBASIC3.83□□□□□ -1.8
PROM1O43490 AC110741.2-201ENST00000605278 268 ntBASIC3.83□□□□□ -1.8
PROM1O43490 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.83□□□□□ -1.8
PROM1O43490 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.83□□□□□ -1.8
PROM1O43490 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.83□□□□□ -1.8
PROM1O43490 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PROM1O43490 AL365204.3-201ENST00000612448 685 ntBASIC3.83□□□□□ -1.8
PROM1O43490 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.83□□□□□ -1.8
PROM1O43490 MIR6075-201ENST00000620782 95 ntBASIC3.83□□□□□ -1.8
PROM1O43490 AC243312.2-201ENST00000623340 601 ntBASIC3.83□□□□□ -1.8
PROM1O43490 AC110801.1-201ENST00000623590 212 ntBASIC3.83□□□□□ -1.8
PROM1O43490 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PROM1O43490 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.83□□□□□ -1.8
PROM1O43490 AP001148.1-201ENST00000624124 2359 ntBASIC3.83□□□□□ -1.8
PROM1O43490 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PROM1O43490 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.83□□□□□ -1.8
PROM1O43490 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.83□□□□□ -1.8
PROM1O43490 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.83□□□□□ -1.8
PROM1O43490 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PROM1O43490 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PROM1O43490 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PROM1O43490 TPTE2P4-201ENST00000258589 1605 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
PROM1O43490 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.82□□□□□ -1.8
PROM1O43490 RNU6-946P-201ENST00000383878 107 ntBASIC3.82□□□□□ -1.8
PROM1O43490 RNU6-701P-201ENST00000384059 107 ntBASIC3.82□□□□□ -1.8
PROM1O43490 RNU6-629P-201ENST00000384061 103 ntBASIC3.82□□□□□ -1.8
PROM1O43490 MIR135A2-201ENST00000384854 100 ntBASIC3.82□□□□□ -1.8
PROM1O43490 SNORA11.1-201ENST00000408133 129 ntBASIC3.82□□□□□ -1.8
PROM1O43490 SNORA3C-201ENST00000408792 125 ntBASIC3.82□□□□□ -1.8
PROM1O43490 RNU6-712P-201ENST00000410558 100 ntBASIC3.82□□□□□ -1.8
PROM1O43490 RNU4-46P-201ENST00000410818 138 ntBASIC3.82□□□□□ -1.8
PROM1O43490 USP9YP20-201ENST00000419224 558 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AL117339.2-201ENST00000430475 180 ntBASIC3.82□□□□□ -1.8
PROM1O43490 KCTD9P3-201ENST00000434597 1169 ntBASIC3.82□□□□□ -1.8
PROM1O43490 NDUFA5P4-201ENST00000436704 385 ntBASIC3.82□□□□□ -1.8
PROM1O43490 BRK1P2-201ENST00000442875 223 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.82□□□□□ -1.8
PROM1O43490 SNORD19B-201ENST00000459623 84 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AC069499.1-201ENST00000489433 509 ntBASIC3.82□□□□□ -1.8
PROM1O43490 Y_RNA.654-201ENST00000497848 106 ntBASIC3.82□□□□□ -1.8
PROM1O43490 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.82□□□□□ -1.8
PROM1O43490 CCDC34P1-201ENST00000507441 517 ntBASIC3.82□□□□□ -1.8
PROM1O43490 RBBP4P6-201ENST00000508098 202 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.82□□□□□ -1.8
PROM1O43490 Y_RNA.682-201ENST00000516457 100 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AC100870.1-201ENST00000522035 505 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AP001804.3-201ENST00000525146 880 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.82□□□□□ -1.8
PROM1O43490 FRG2DP-202ENST00000566967 323 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AC022968.1-201ENST00000567372 442 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.82□□□□□ -1.8
PROM1O43490 AC092747.3-201ENST00000603769 301 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AL592436.1-201ENST00000605135 558 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AL670379.4-201ENST00000605279 254 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AL158032.1-201ENST00000605401 106 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.82□□□□□ -1.8
PROM1O43490 AP001486.3-201ENST00000615334 372 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AL357559.1-201ENST00000622228 274 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AL773545.4-201ENST00000637262 310 ntBASIC3.82□□□□□ -1.8
PROM1O43490 AL513478.4-201ENST00000641636 310 ntBASIC3.82□□□□□ -1.8
PROM1O43490 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PROM1O43490 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PROM1O43490 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
PROM1O43490 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
PROM1O43490 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.82□□□□□ -1.8
PROM1O43490 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
PROM1O43490 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.81□□□□□ -1.8
PROM1O43490 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.81□□□□□ -1.8
PROM1O43490 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
PROM1O43490 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
PROM1O43490 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.81□□□□□ -1.8
PROM1O43490 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.81□□□□□ -1.8
PROM1O43490 RNA5SP130-201ENST00000364431 114 ntBASIC3.81□□□□□ -1.8
PROM1O43490 SMIM11P1-201ENST00000369586 178 ntBASIC3.81□□□□□ -1.8
PROM1O43490 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.81□□□□□ -1.8
PROM1O43490 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.81□□□□□ -1.8
PROM1O43490 RNU6-550P-201ENST00000391057 101 ntBASIC3.81□□□□□ -1.8
PROM1O43490 PTMAP2-201ENST00000397627 327 ntBASIC3.81□□□□□ -1.8
PROM1O43490 AL359634.1-202ENST00000404721 284 ntBASIC3.81□□□□□ -1.8
PROM1O43490 RNU6-387P-201ENST00000411331 105 ntBASIC3.81□□□□□ -1.8
PROM1O43490 CRYBB2P1-203ENST00000415709 538 ntBASIC3.81□□□□□ -1.8
PROM1O43490 SSXP9-201ENST00000417503 292 ntBASIC3.81□□□□□ -1.8
PROM1O43490 BTF3L4P3-201ENST00000418879 476 ntBASIC3.81□□□□□ -1.8
PROM1O43490 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms