Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC88BA6NC98 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
CCDC88BA6NC98 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC88BA6NC98 AL121769.1-201ENST00000469473 401 ntBASIC1.44□□□□□ -2.18
CCDC88BA6NC98 RN7SKP277-201ENST00000516895 283 ntBASIC1.44□□□□□ -2.18
CCDC88BA6NC98 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC88BA6NC98 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC1.44□□□□□ -2.18
CCDC88BA6NC98 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.44□□□□□ -2.18
CCDC88BA6NC98 AC078899.2-201ENST00000595282 212 ntBASIC1.44□□□□□ -2.18
CCDC88BA6NC98 AC243773.3-201ENST00000613270 256 ntBASIC1.44□□□□□ -2.18
CCDC88BA6NC98 AL138955.1-201ENST00000622881 1040 ntBASIC1.44□□□□□ -2.18
CCDC88BA6NC98 AC009541.1-201ENST00000438279 2662 ntBASIC1.44□□□□□ -2.18
CCDC88BA6NC98 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
CCDC88BA6NC98 CISD1P1-201ENST00000393907 327 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 RNU6-920P-201ENST00000410926 92 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 AC023347.2-201ENST00000433994 462 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 AL022238.1-201ENST00000442557 355 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 AC118469.1-201ENST00000442943 488 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 RNF2P1-201ENST00000442955 1010 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.43□□□□□ -2.18
CCDC88BA6NC98 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC1.43□□□□□ -2.18
CCDC88BA6NC98 HMGB1P22-201ENST00000505315 124 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 COL6A4P2-205ENST00000509855 506 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 AL355812.1-201ENST00000603215 216 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC1.43□□□□□ -2.18
CCDC88BA6NC98 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC88BA6NC98 OSTCP8-201ENST00000445117 448 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 RNU1-98P-201ENST00000458992 160 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 NAP1L1P3-201ENST00000462291 880 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 EIF4EP5-201ENST00000528228 640 ntBASIC1.43□□□□□ -2.18
CCDC88BA6NC98 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.43□□□□□ -2.18
CCDC88BA6NC98 AL022578.1-201ENST00000439330 1433 ntBASIC1.42□□□□□ -2.18
CCDC88BA6NC98 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
CCDC88BA6NC98 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC88BA6NC98 AL596276.1-201ENST00000434465 418 ntBASIC1.42□□□□□ -2.18
CCDC88BA6NC98 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.42□□□□□ -2.18
CCDC88BA6NC98 EIF4EP3-201ENST00000498782 656 ntBASIC1.42□□□□□ -2.18
CCDC88BA6NC98 KATNBL1P4-201ENST00000503545 918 ntBASIC1.42□□□□□ -2.18
CCDC88BA6NC98 RNU7-193P-201ENST00000516723 65 ntBASIC1.42□□□□□ -2.18
CCDC88BA6NC98 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.42□□□□□ -2.18
CCDC88BA6NC98 AL161629.2-201ENST00000615347 275 ntBASIC1.42□□□□□ -2.18
CCDC88BA6NC98 HAUS6P2-201ENST00000433254 2404 ntBASIC1.41□□□□□ -2.18
CCDC88BA6NC98 RNU1-78P-201ENST00000391248 165 ntBASIC1.41□□□□□ -2.18
CCDC88BA6NC98 RPS4XP3-201ENST00000398541 413 ntBASIC1.41□□□□□ -2.18
CCDC88BA6NC98 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC88BA6NC98 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
CCDC88BA6NC98 NDUFB4P2-201ENST00000509515 391 ntBASIC1.41□□□□□ -2.18
CCDC88BA6NC98 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.41□□□□□ -2.18
CCDC88BA6NC98 RNU6-970P-201ENST00000516312 107 ntBASIC1.41□□□□□ -2.18
CCDC88BA6NC98 AC008127.2-201ENST00000549925 1075 ntBASIC1.41□□□□□ -2.18
CCDC88BA6NC98 AC074029.2-201ENST00000551045 634 ntBASIC1.41□□□□□ -2.18
CCDC88BA6NC98 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.41□□□□□ -2.18
CCDC88BA6NC98 MIR3616-201ENST00000584070 92 ntBASIC1.41□□□□□ -2.18
CCDC88BA6NC98 AC069304.3-201ENST00000603938 1084 ntBASIC1.41□□□□□ -2.18
CCDC88BA6NC98 AP005137.2-201ENST00000609238 400 ntBASIC1.41□□□□□ -2.18
CCDC88BA6NC98 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.41□□□□□ -2.18
CCDC88BA6NC98 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
CCDC88BA6NC98 DEFB108F-201ENST00000344638 222 ntBASIC1.4□□□□□ -2.19
CCDC88BA6NC98 RNA5SP450-201ENST00000411206 102 ntBASIC1.4□□□□□ -2.19
CCDC88BA6NC98 MTCYBP34-201ENST00000439552 670 ntBASIC1.4□□□□□ -2.19
CCDC88BA6NC98 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC88BA6NC98 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC1.4□□□□□ -2.19
CCDC88BA6NC98 AC103833.1-201ENST00000517442 172 ntBASIC1.4□□□□□ -2.19
CCDC88BA6NC98 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC1.4□□□□□ -2.19
CCDC88BA6NC98 AL031274.2-201ENST00000599419 203 ntBASIC1.4□□□□□ -2.19
CCDC88BA6NC98 AL109918.3-201ENST00000603072 338 ntBASIC1.4□□□□□ -2.19
CCDC88BA6NC98 Y_RNA.251-201ENST00000364551 99 ntBASIC1.39□□□□□ -2.19
CCDC88BA6NC98 RNU6-955P-201ENST00000410497 104 ntBASIC1.39□□□□□ -2.19
CCDC88BA6NC98 RNU6-516P-201ENST00000411381 104 ntBASIC1.39□□□□□ -2.19
CCDC88BA6NC98 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
CCDC88BA6NC98 NEFMP1-201ENST00000443423 1006 ntBASIC1.39□□□□□ -2.19
CCDC88BA6NC98 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.39□□□□□ -2.19
CCDC88BA6NC98 snoU13.4-201ENST00000458916 104 ntBASIC1.39□□□□□ -2.19
CCDC88BA6NC98 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.39□□□□□ -2.19
CCDC88BA6NC98 RNU6-928P-201ENST00000516876 104 ntBASIC1.39□□□□□ -2.19
CCDC88BA6NC98 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.39□□□□□ -2.19
CCDC88BA6NC98 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
CCDC88BA6NC98 AC012254.4-201ENST00000588843 273 ntBASIC1.39□□□□□ -2.19
CCDC88BA6NC98 AC025594.3-201ENST00000613068 790 ntBASIC1.39□□□□□ -2.19
CCDC88BA6NC98 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
CCDC88BA6NC98 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
CCDC88BA6NC98 ZBTB8OSP1-201ENST00000342688 498 ntBASIC1.38□□□□□ -2.19
CCDC88BA6NC98 MIR193B-201ENST00000384907 83 ntBASIC1.38□□□□□ -2.19
CCDC88BA6NC98 UBE2V1P9-201ENST00000414760 368 ntBASIC1.38□□□□□ -2.19
CCDC88BA6NC98 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC88BA6NC98 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.38□□□□□ -2.19
CCDC88BA6NC98 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.38□□□□□ -2.19
CCDC88BA6NC98 TPMTP4-201ENST00000450749 678 ntBASIC1.38□□□□□ -2.19
CCDC88BA6NC98 RPL31P41-201ENST00000477967 372 ntBASIC1.38□□□□□ -2.19
CCDC88BA6NC98 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC88BA6NC98 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.38□□□□□ -2.19
CCDC88BA6NC98 AC005034.5-201ENST00000604219 466 ntBASIC1.38□□□□□ -2.19
CCDC88BA6NC98 AC106052.1-201ENST00000608029 497 ntBASIC1.38□□□□□ -2.19
CCDC88BA6NC98 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC88BA6NC98 AC003001.2-201ENST00000616294 831 ntBASIC1.38□□□□□ -2.19
CCDC88BA6NC98 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.38□□□□□ -2.19
CCDC88BA6NC98 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
CCDC88BA6NC98 MT-TP-201ENST00000387461 68 ntBASIC1.37□□□□□ -2.19
CCDC88BA6NC98 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms