Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC007656.2-201ENST00000624902 4547 ntBASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 AL139276.1-201ENST00000311910 1001 ntBASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 MIR128-1-201ENST00000384921 82 ntBASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 AC063979.1-201ENST00000415539 377 ntBASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 RPL23AP82-202ENST00000427528 469 ntBASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 RPL12P25-201ENST00000455592 494 ntBASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 SUMO2P6-201ENST00000505273 288 ntBASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 SNORA59B-202ENST00000578183 701 ntBASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 MIR4644-201ENST00000579929 84 ntBASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 AC027290.2-201ENST00000623210 18662 ntBASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 SNORA4.3-201ENST00000365564 137 ntBASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 RNU6-877P-201ENST00000383868 107 ntBASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 AL606923.1-201ENST00000406616 190 ntBASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 RNU6-1077P-201ENST00000410506 102 ntBASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 AL591419.1-201ENST00000427423 339 ntBASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 AF213884.2-201ENST00000510417 903 ntBASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 RN7SKP18-201ENST00000516005 275 ntBASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 AP003122.3-201ENST00000526316 255 ntBASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 AC084851.1-201ENST00000529105 249 ntBASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 AL157871.3-201ENST00000557231 293 ntBASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 AC007014.2-201ENST00000615581 479 ntBASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC9Q9Y3X0 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 NACAP2-201ENST00000318548 624 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 Y_RNA.256-201ENST00000364594 104 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AC007390.1-201ENST00000415722 356 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 RBM6-203ENST00000421682 684 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 GTF2IP20-201ENST00000431663 360 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AL139415.2-201ENST00000431968 163 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AL591473.1-201ENST00000464297 313 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 RN7SKP46-201ENST00000515942 234 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AC007991.1-201ENST00000522680 631 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AP000867.2-201ENST00000532468 320 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 MIR1273C-201ENST00000578669 77 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AP001094.1-201ENST00000579805 193 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 MIR4513-201ENST00000581077 86 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AC068944.2-201ENST00000610373 403 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AC079684.1-201ENST00000621405 437 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 U6.98-201ENST00000637157 84 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AL354685.2-201ENST00000448218 1447 ntBASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
CCDC9Q9Y3X0 AL365361.1-201ENST00000566942 3481 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 Y_RNA.33-201ENST00000362591 102 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 Y_RNA.89-201ENST00000363031 102 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 RNA5SP267-201ENST00000364893 126 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 RNU6-395P-201ENST00000365662 106 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 MIR921-201ENST00000401133 56 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AL122016.1-201ENST00000403365 367 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 RNU6-908P-201ENST00000410160 94 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AL158156.1-201ENST00000422509 473 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AC017083.1-201ENST00000428093 483 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AC000111.3-201ENST00000433478 193 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 SNORA31.1-201ENST00000515993 133 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 SNORA31.5-201ENST00000516190 133 ntBASIC5.29□□□□□ -1.56
CCDC9Q9Y3X0 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 247.7 ms