Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RN7SKP156-201ENST00000410308 342 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 RPL30P2-201ENST00000414021 291 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 MTCO3P46-201ENST00000425787 232 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AC018644.1-201ENST00000429934 551 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 RPL7P28-201ENST00000437739 740 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 TXNP1-201ENST00000441872 371 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 ELOCP23-201ENST00000452014 332 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AC084198.1-201ENST00000477747 402 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 RPL21P99-201ENST00000480369 423 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AL359273.1-201ENST00000510918 627 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 RNA5SP309-201ENST00000516670 106 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 RNU6-1073P-201ENST00000517182 106 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 IGKV2D-23-201ENST00000518179 286 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 PSMA2P1-201ENST00000526365 646 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AC023050.3-201ENST00000541142 333 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 PSMA3P-201ENST00000555485 635 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AC007619.2-201ENST00000605743 379 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 MIR486-1-201ENST00000612171 68 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AL121772.2-201ENST00000614331 297 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 uc_338.34-201ENST00000617467 174 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AC100810.6-201ENST00000638068 285 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.71□□□□□ -1.81
PTCHD3Q3KNS1 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 USP8P1-201ENST00000494673 3183 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 RNU6-82P-201ENST00000363970 107 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 RNU4-66P-201ENST00000365199 138 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 MIR514A1-201ENST00000385133 98 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 MT-TD-201ENST00000387419 68 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 RNA5SP171-201ENST00000391071 115 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 Z98941.1-201ENST00000407764 100 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AL356867.1-201ENST00000429623 299 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 HMGB1P27-201ENST00000431429 603 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 TRBV12-2-201ENST00000489763 344 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 BTF3L4P4-201ENST00000506381 449 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 RBBP4P6-201ENST00000508098 202 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 RAC1P2-201ENST00000511164 579 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 RNA5SP208-201ENST00000516156 78 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 SCARNA15.2-201ENST00000516409 127 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 CYCSP30-201ENST00000546447 172 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AL138889.2-201ENST00000603883 242 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AC013553.2-201ENST00000604244 589 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AL137849.1-201ENST00000604767 169 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AP002826.1-201ENST00000608835 315 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AL390240.1-201ENST00000612950 384 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AC034102.8-201ENST00000615146 484 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 Y_RNA.804-201ENST00000615262 101 ntBASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PTCHD3Q3KNS1 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.7□□□□□ -1.82
PTCHD3Q3KNS1 U3.12-201ENST00000364498 214 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms