Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 HSPE1P20-201ENST00000538133 289 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 AL133271.1-201ENST00000538229 291 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
PTPN4P29074 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
PTPN4P29074 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.79□□□□□ -1.96
PTPN4P29074 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
PTPN4P29074 AC090888.1-201ENST00000561335 1141 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC2.79□□□□□ -1.96
PTPN4P29074 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.79□□□□□ -1.96
PTPN4P29074 MIR544B-201ENST00000582372 78 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 MIR4672-201ENST00000583126 81 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 AC090616.2-202ENST00000584248 222 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 AF038458.1-201ENST00000588406 262 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 AC002545.1-201ENST00000592511 181 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 BCRP9-201ENST00000605312 388 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
PTPN4P29074 AC004223.4-201ENST00000612426 332 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 CR381653.2-201ENST00000624041 768 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.79□□□□□ -1.96
PTPN4P29074 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.79□□□□□ -1.96
PTPN4P29074 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
PTPN4P29074 PABPC1P9-201ENST00000426076 1612 ntBASIC2.79□□□□□ -1.96
PTPN4P29074 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
PTPN4P29074 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
PTPN4P29074 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.78□□□□□ -1.96
PTPN4P29074 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.78□□□□□ -1.96
PTPN4P29074 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.78□□□□□ -1.96
PTPN4P29074 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
PTPN4P29074 RNU6-500P-201ENST00000362349 107 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.78□□□□□ -1.96
PTPN4P29074 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.78□□□□□ -1.96
PTPN4P29074 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.78□□□□□ -1.96
PTPN4P29074 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.78□□□□□ -1.96
PTPN4P29074 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.78□□□□□ -1.96
PTPN4P29074 UBE2FP1-201ENST00000416536 447 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.78□□□□□ -1.96
PTPN4P29074 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.78□□□□□ -1.96
PTPN4P29074 RPS6P15-201ENST00000431996 751 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 RPS20P5-201ENST00000434808 360 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.78□□□□□ -1.96
PTPN4P29074 AC105272.1-201ENST00000438604 198 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 AL714022.1-201ENST00000439897 151 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 PIGFP3-201ENST00000441918 722 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 RPS24P13-201ENST00000442520 397 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 TPT1P14-201ENST00000448018 505 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 RPS15AP27-201ENST00000449183 343 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.78□□□□□ -1.96
PTPN4P29074 OR6K1P-201ENST00000456766 971 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 RNU7-125P-201ENST00000458760 62 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 AC116337.2-201ENST00000477662 156 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.78□□□□□ -1.96
PTPN4P29074 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.78□□□□□ -1.96
PTPN4P29074 TTC39CP1-201ENST00000512513 755 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.78□□□□□ -1.96
PTPN4P29074 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.78□□□□□ -1.96
PTPN4P29074 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.78□□□□□ -1.96
PTPN4P29074 HMGB1P41-201ENST00000520234 440 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.78□□□□□ -1.96
PTPN4P29074 AC100870.1-201ENST00000522035 505 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.78□□□□□ -1.96
PTPN4P29074 AC013828.2-201ENST00000532487 235 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 AP001004.1-201ENST00000582468 324 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.78□□□□□ -1.96
PTPN4P29074 AC079248.2-201ENST00000623779 326 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 AC019226.2-201ENST00000625973 424 ntBASIC2.78□□□□□ -1.96
PTPN4P29074 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
PTPN4P29074 MTND5P33-201ENST00000571250 1450 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.77□□□□□ -1.97
PTPN4P29074 AC096644.4-201ENST00000563417 2912 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.77□□□□□ -1.97
PTPN4P29074 RNU6-270P-201ENST00000364131 105 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 RNU6-769P-201ENST00000384407 104 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 RNU6-278P-201ENST00000390945 109 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 AL512633.1-201ENST00000399931 655 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 CCNG1P1-201ENST00000406783 885 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 RNU2-33P-201ENST00000410344 192 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 RNU4-72P-201ENST00000410754 173 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.77□□□□□ -1.97
PTPN4P29074 BX682237.1-201ENST00000415016 335 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.77□□□□□ -1.97
PTPN4P29074 AC099548.1-201ENST00000421443 426 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 MTND4P20-201ENST00000424125 869 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 AC092047.1-201ENST00000424997 240 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.77□□□□□ -1.97
PTPN4P29074 AL133217.1-201ENST00000450980 425 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.77□□□□□ -1.97
PTPN4P29074 AC108059.3-201ENST00000456388 214 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 AC013267.1-201ENST00000458227 267 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 AC008481.1-201ENST00000463278 396 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 RPS15AP36-201ENST00000492022 382 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
PTPN4P29074 HIGD1AP13-201ENST00000509878 289 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 MTND1P22-201ENST00000510572 951 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 NRON-201ENST00000517270 370 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 SUB1P1-201ENST00000524415 382 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 AC007954.1-201ENST00000554198 494 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 MTND3P12-201ENST00000559068 328 ntBASIC2.77□□□□□ -1.97
PTPN4P29074 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms