Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC4.68□□□□□ -1.66
COL8A1P27658 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.68□□□□□ -1.66
COL8A1P27658 AC103996.1-201ENST00000555468 102 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 MIR4431-201ENST00000579990 94 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 MIR6864-201ENST00000617935 70 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 AC068724.3-201ENST00000625906 87 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
COL8A1P27658 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
COL8A1P27658 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
COL8A1P27658 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 AC139769.1-204ENST00000472297 1931 ntBASIC4.68□□□□□ -1.66
COL8A1P27658 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC4.68□□□□□ -1.66
COL8A1P27658 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL8A1P27658 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC4.68□□□□□ -1.66
COL8A1P27658 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC4.67□□□□□ -1.66
COL8A1P27658 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.67□□□□□ -1.66
COL8A1P27658 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.67□□□□□ -1.66
COL8A1P27658 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
COL8A1P27658 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL8A1P27658 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC4.67□□□□□ -1.66
COL8A1P27658 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL8A1P27658 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC4.67□□□□□ -1.66
COL8A1P27658 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL8A1P27658 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.67□□□□□ -1.66
COL8A1P27658 RNU6-227P-201ENST00000362865 103 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 RNU6-626P-201ENST00000363354 107 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 RNU6-512P-201ENST00000364438 103 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 RNU6-1175P-201ENST00000365200 107 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 RNU6-843P-201ENST00000384454 104 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 MIR105-1-201ENST00000385222 81 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 RNA5SP332-201ENST00000391063 115 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 RNU2-22P-201ENST00000411266 212 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 AL592148.1-201ENST00000413568 445 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.67□□□□□ -1.66
COL8A1P27658 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.67□□□□□ -1.66
COL8A1P27658 AP000907.1-201ENST00000428428 510 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 MTATP6P7-201ENST00000453315 681 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
COL8A1P27658 RNA5SP76-201ENST00000516277 87 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 AC136777.2-201ENST00000522979 358 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.67□□□□□ -1.66
COL8A1P27658 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.67□□□□□ -1.66
COL8A1P27658 MIR4691-201ENST00000583764 85 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.67□□□□□ -1.66
COL8A1P27658 AC060766.3-201ENST00000591442 263 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC4.67□□□□□ -1.66
COL8A1P27658 KLKP1-201ENST00000595979 403 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 SRGNP1-201ENST00000603392 451 ntBASIC4.67□□□□□ -1.66
COL8A1P27658 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.67□□□□□ -1.66
COL8A1P27658 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
COL8A1P27658 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL8A1P27658 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL8A1P27658 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL8A1P27658 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL8A1P27658 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.67□□□□□ -1.66
COL8A1P27658 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL8A1P27658 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.67□□□□□ -1.66
COL8A1P27658 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL8A1P27658 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL8A1P27658 AC016745.2-201ENST00000608834 3443 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC4.66□□□□□ -1.66
COL8A1P27658 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
COL8A1P27658 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.66□□□□□ -1.66
COL8A1P27658 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL8A1P27658 RNU6-199P-201ENST00000362954 107 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 RNA5SP197-201ENST00000363357 119 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 RPL31P2-201ENST00000413849 377 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 RPS12P23-201ENST00000419579 400 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.66□□□□□ -1.66
COL8A1P27658 RPS20P1-201ENST00000434853 354 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 KRT8P51-201ENST00000438938 274 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL8A1P27658 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.66□□□□□ -1.66
COL8A1P27658 AC022493.1-201ENST00000492984 337 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.66□□□□□ -1.66
COL8A1P27658 AC107027.2-201ENST00000512197 115 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.66□□□□□ -1.66
COL8A1P27658 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.66□□□□□ -1.66
COL8A1P27658 TRAV37-201ENST00000553906 342 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.66□□□□□ -1.66
COL8A1P27658 MIR4737-201ENST00000583979 81 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 MIR6780A-201ENST00000615089 68 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL8A1P27658 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL8A1P27658 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL8A1P27658 AC097461.1-201ENST00000568928 2821 ntBASIC4.66□□□□□ -1.66
COL8A1P27658 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL8A1P27658 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL8A1P27658 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
COL8A1P27658 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL8A1P27658 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
COL8A1P27658 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
COL8A1P27658 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.65□□□□□ -1.66
COL8A1P27658 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
COL8A1P27658 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
COL8A1P27658 AC138907.8-201ENST00000623981 2256 ntBASIC4.65□□□□□ -1.66
COL8A1P27658 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.65□□□□□ -1.66
COL8A1P27658 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC4.65□□□□□ -1.66
COL8A1P27658 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.65□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms