Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC025263.3-201ENST00000622965 1396 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU5B-1-201ENST00000363286 116 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-353P-201ENST00000364266 108 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-1-201ENST00000383898 107 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-468P-201ENST00000384003 109 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-42P-201ENST00000384165 107 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-36P-201ENST00000384172 107 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-4P-201ENST00000384205 107 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-5P-201ENST00000384238 107 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-3P-201ENST00000384314 107 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-2-201ENST00000384627 107 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-9-201ENST00000384776 107 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-33P-201ENST00000384793 107 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-1176P-201ENST00000390955 107 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 MIR1304-201ENST00000408243 91 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 AC073264.1-201ENST00000411508 416 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC1.79□□□□□ -2.12
COL5A3P25940 HMGN2P19-201ENST00000425149 265 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC1.79□□□□□ -2.12
COL5A3P25940 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC1.79□□□□□ -2.12
COL5A3P25940 AL929288.2-201ENST00000446368 407 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.79□□□□□ -2.12
COL5A3P25940 RNU7-140P-201ENST00000459546 60 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC1.79□□□□□ -2.12
COL5A3P25940 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-488P-201ENST00000515918 99 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 AC104417.1-201ENST00000523974 751 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.79□□□□□ -2.12
COL5A3P25940 AC092470.1-201ENST00000546187 132 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC1.79□□□□□ -2.12
COL5A3P25940 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC1.79□□□□□ -2.12
COL5A3P25940 AC074051.3-201ENST00000570238 358 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 MIR4504-201ENST00000577413 92 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 MIR4509-3-201ENST00000578671 94 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 BPTFP1-201ENST00000579209 492 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 MIR4509-2-201ENST00000583920 94 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 AC090330.1-201ENST00000588646 764 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 VN1R88P-201ENST00000596787 292 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 AL445435.1-201ENST00000604232 665 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 RNU6-6P-201ENST00000606623 107 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.79□□□□□ -2.12
COL5A3P25940 MIR4509-1-201ENST00000618224 94 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 AC010608.3-201ENST00000625048 527 ntBASIC1.79□□□□□ -2.12
COL5A3P25940 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC1.79□□□□□ -2.12
COL5A3P25940 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC1.79□□□□□ -2.12
COL5A3P25940 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
COL5A3P25940 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
COL5A3P25940 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.78□□□□□ -2.12
COL5A3P25940 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC1.78□□□□□ -2.12
COL5A3P25940 RNU6-1181P-201ENST00000384191 106 ntBASIC1.78□□□□□ -2.12
COL5A3P25940 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC1.78□□□□□ -2.12
COL5A3P25940 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC1.78□□□□□ -2.12
COL5A3P25940 OFD1P18Y-201ENST00000420889 959 ntBASIC1.78□□□□□ -2.12
COL5A3P25940 RPL21P66-201ENST00000426566 466 ntBASIC1.78□□□□□ -2.12
COL5A3P25940 MTCYBP15-201ENST00000433123 1127 ntBASIC1.78□□□□□ -2.12
COL5A3P25940 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
COL5A3P25940 AL121871.1-201ENST00000443413 436 ntBASIC1.78□□□□□ -2.12
COL5A3P25940 AL034418.1-201ENST00000448675 860 ntBASIC1.78□□□□□ -2.12
COL5A3P25940 Z99714.1-201ENST00000450463 807 ntBASIC1.78□□□□□ -2.12
COL5A3P25940 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.78□□□□□ -2.12
COL5A3P25940 XACT-201ENST00000468762 497 ntTSL 5 BASIC1.78□□□□□ -2.12
COL5A3P25940 AC021451.1-201ENST00000523498 1129 ntBASIC1.78□□□□□ -2.12
COL5A3P25940 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.78□□□□□ -2.12
COL5A3P25940 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
COL5A3P25940 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC1.78□□□□□ -2.12
COL5A3P25940 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.78□□□□□ -2.12
COL5A3P25940 AC122134.1-202ENST00000569111 1201 ntBASIC1.78□□□□□ -2.12
COL5A3P25940 AC099785.1-201ENST00000605697 437 ntBASIC1.78□□□□□ -2.12
COL5A3P25940 AC099654.8-201ENST00000637757 681 ntBASIC1.78□□□□□ -2.12
COL5A3P25940 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
COL5A3P25940 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.78□□□□□ -2.12
COL5A3P25940 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC1.78□□□□□ -2.12
COL5A3P25940 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.78□□□□□ -2.12
COL5A3P25940 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC1.78□□□□□ -2.13
COL5A3P25940 Z82195.2-201ENST00000612348 18351 ntBASIC1.78□□□□□ -2.13
COL5A3P25940 RNU6-236P-201ENST00000363886 106 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 RNU1-93P-201ENST00000364704 169 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 RNU6-1226P-201ENST00000384317 107 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 SNORD116-12-201ENST00000384468 92 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 RNU6-342P-201ENST00000384521 104 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 AC096533.1-201ENST00000411645 353 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC1.77□□□□□ -2.13
COL5A3P25940 NANOGP2-201ENST00000435391 727 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 AC090774.1-201ENST00000435925 246 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC1.77□□□□□ -2.13
COL5A3P25940 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC1.77□□□□□ -2.13
COL5A3P25940 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.77□□□□□ -2.13
COL5A3P25940 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.77□□□□□ -2.13
COL5A3P25940 AC010301.1-201ENST00000473936 355 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 MTCO3P15-201ENST00000526563 574 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 AP002748.2-201ENST00000528671 348 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 OR8K4P-201ENST00000534608 872 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 AC087897.1-201ENST00000550134 156 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.77□□□□□ -2.13
COL5A3P25940 OR4G1P-201ENST00000588632 938 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 AL133507.1-201ENST00000605269 557 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.77□□□□□ -2.13
COL5A3P25940 MIR6840-201ENST00000611937 71 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 uc_338.12-201ENST00000616344 181 ntBASIC1.77□□□□□ -2.13
COL5A3P25940 AC092608.3-201ENST00000625017 386 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms