Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MIR4698-201ENST00000577795 80 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 ELL2P3-201ENST00000457883 1602 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC0.93□□□□□ -2.26
COL6A3P12111 AC138915.1-201ENST00000565427 1685 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 AC245060.5-201ENST00000610778 3293 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
COL6A3P12111 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
COL6A3P12111 MTCO3P46-201ENST00000425787 232 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 HMGB3P30-201ENST00000457863 606 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 AC104685.1-201ENST00000502445 371 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 AC011468.4-201ENST00000603942 409 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 Pinc.1-201ENST00000616452 154 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
COL6A3P12111 OR5H6-203ENST00000642105 978 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC0.92□□□□□ -2.26
COL6A3P12111 Y_RNA.447-201ENST00000384184 113 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 RNU6-700P-201ENST00000391043 107 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 HSPE1P26-201ENST00000405341 275 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.92□□□□□ -2.26
COL6A3P12111 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC0.92□□□□□ -2.26
COL6A3P12111 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.92□□□□□ -2.26
COL6A3P12111 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC0.92□□□□□ -2.26
COL6A3P12111 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC0.92□□□□□ -2.26
COL6A3P12111 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.92□□□□□ -2.26
COL6A3P12111 SNORD57-201ENST00000448188 72 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC0.92□□□□□ -2.26
COL6A3P12111 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC0.92□□□□□ -2.26
COL6A3P12111 AC020658.4-201ENST00000613987 684 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 AC145207.9-201ENST00000623802 325 ntBASIC0.92□□□□□ -2.26
COL6A3P12111 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.91□□□□□ -2.26
COL6A3P12111 SNORD56.5-201ENST00000364281 72 ntBASIC0.91□□□□□ -2.26
COL6A3P12111 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.91□□□□□ -2.26
COL6A3P12111 AL136380.1-201ENST00000447970 162 ntBASIC0.91□□□□□ -2.26
COL6A3P12111 AC133485.1-201ENST00000567176 124 ntBASIC0.91□□□□□ -2.26
COL6A3P12111 AC138907.6-201ENST00000568401 126 ntBASIC0.91□□□□□ -2.26
COL6A3P12111 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.91□□□□□ -2.26
COL6A3P12111 AC113368.1-201ENST00000603736 382 ntBASIC0.91□□□□□ -2.26
COL6A3P12111 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC0.91□□□□□ -2.26
COL6A3P12111 Y_RNA.55-201ENST00000362797 102 ntBASIC0.91□□□□□ -2.26
COL6A3P12111 RPS29P23-201ENST00000458635 123 ntBASIC0.91□□□□□ -2.26
COL6A3P12111 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC0.91□□□□□ -2.26
COL6A3P12111 AC083923.1-201ENST00000523708 376 ntBASIC0.91□□□□□ -2.26
COL6A3P12111 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC0.91□□□□□ -2.26
COL6A3P12111 RNU6-942P-201ENST00000363002 107 ntBASIC0.9□□□□□ -2.26
COL6A3P12111 MIR513A1-201ENST00000385138 129 ntBASIC0.9□□□□□ -2.26
COL6A3P12111 RNA5SP511-201ENST00000410487 115 ntBASIC0.9□□□□□ -2.26
COL6A3P12111 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.9□□□□□ -2.26
COL6A3P12111 ZNF90P2-204ENST00000419323 1075 ntBASIC0.9□□□□□ -2.26
COL6A3P12111 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC0.9□□□□□ -2.26
COL6A3P12111 AC010625.1-201ENST00000511296 403 ntBASIC0.9□□□□□ -2.26
COL6A3P12111 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.26
COL6A3P12111 AC005786.1-201ENST00000588553 154 ntBASIC0.9□□□□□ -2.26
COL6A3P12111 YWHAQP7-201ENST00000603536 658 ntBASIC0.9□□□□□ -2.26
COL6A3P12111 AC091304.6-201ENST00000619761 202 ntBASIC0.9□□□□□ -2.26
COL6A3P12111 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC0.9□□□□□ -2.27
COL6A3P12111 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC0.9□□□□□ -2.27
COL6A3P12111 AC005908.1-201ENST00000468701 347 ntBASIC0.9□□□□□ -2.27
COL6A3P12111 AC125611.2-201ENST00000551907 647 ntBASIC0.9□□□□□ -2.27
COL6A3P12111 AC083899.3-201ENST00000603413 594 ntBASIC0.9□□□□□ -2.27
COL6A3P12111 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.27
COL6A3P12111 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.9□□□□□ -2.27
COL6A3P12111 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
COL6A3P12111 Y_RNA.146-201ENST00000363549 102 ntBASIC0.89□□□□□ -2.27
COL6A3P12111 RNY4P6-201ENST00000363667 96 ntBASIC0.89□□□□□ -2.27
COL6A3P12111 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC0.89□□□□□ -2.27
COL6A3P12111 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
COL6A3P12111 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC0.89□□□□□ -2.27
COL6A3P12111 AP001180.3-201ENST00000582221 145 ntBASIC0.89□□□□□ -2.27
COL6A3P12111 AC106028.5-201ENST00000610332 395 ntBASIC0.89□□□□□ -2.27
COL6A3P12111 MIR1285-1-201ENST00000408593 84 ntBASIC0.89□□□□□ -2.27
COL6A3P12111 XIST-201ENST00000416330 750 ntTSL 2 BASIC0.89□□□□□ -2.27
COL6A3P12111 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC0.89□□□□□ -2.27
COL6A3P12111 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC0.89□□□□□ -2.27
COL6A3P12111 TRBVB-201ENST00000477100 408 ntBASIC0.89□□□□□ -2.27
COL6A3P12111 MRPL42P6-201ENST00000486397 371 ntBASIC0.89□□□□□ -2.27
COL6A3P12111 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
COL6A3P12111 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC0.89□□□□□ -2.27
COL6A3P12111 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC0.89□□□□□ -2.27
COL6A3P12111 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC0.89□□□□□ -2.27
COL6A3P12111 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC0.89□□□□□ -2.27
COL6A3P12111 AC008163.1-202ENST00000636004 2889 ntBASIC0.89□□□□□ -2.27
COL6A3P12111 RNU6-1104P-201ENST00000384723 104 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 AL355497.1-201ENST00000406262 551 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 ARPC3P2-201ENST00000457786 533 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 AC009901.1-201ENST00000506703 541 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 RNU1-104P-201ENST00000517280 175 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 AC121333.1-201ENST00000567488 2709 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 OR4G2P-201ENST00000328113 903 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
COL6A3P12111 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC0.88□□□□□ -2.27
COL6A3P12111 AC018437.1-201ENST00000492214 406 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 AC068446.3-201ENST00000555285 382 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
COL6A3P12111 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
COL6A3P12111 RNU1-62P-201ENST00000362599 164 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 Y_RNA.495-201ENST00000384435 112 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 RPL23AP32-201ENST00000395315 459 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 AC092745.2-202ENST00000411880 369 ntBASIC0.88□□□□□ -2.27
COL6A3P12111 AC092832.1-201ENST00000422934 400 ntBASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms