Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 KRT8P26-201ENST00000534154 1276 ntBASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 AC073130.3-201ENST00000624389 2278 ntBASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDHGA1Q9Y5H4 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHGA1Q9Y5H4 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 AP002383.4-201ENST00000442518 975 ntBASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDHGA1Q9Y5H4 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 AC092667.1-201ENST00000434301 2586 ntBASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
PCDHGA1Q9Y5H4 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms