Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 AP003041.3-201ENST00000527151 707 ntBASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 AC140113.3-201ENST00000605663 199 ntBASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 AP000550.4-202ENST00000639755 178 ntBASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 TCF3P1-201ENST00000423021 1937 ntBASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
TM9SF3Q9HD45 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 HOMER2P1-201ENST00000455653 964 ntBASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 AL023973.1-201ENST00000624619 620 ntBASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TM9SF3Q9HD45 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 AL441883.1-201ENST00000566170 1045 ntBASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 AL121956.5-201ENST00000625261 221 ntBASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TM9SF3Q9HD45 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms