Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 AC006333.2-201ENST00000607957 2099 ntBASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 AC026471.1-201ENST00000564629 3026 ntBASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC40Q4G0X9 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 AC006058.3-201ENST00000606217 1069 ntBASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CCDC40Q4G0X9 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC40Q4G0X9 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 KRT16P5-201ENST00000455284 522 ntBASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 CD99P1-205ENST00000527459 561 ntBASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 AC073648.6-201ENST00000641589 218 ntBASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC40Q4G0X9 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
CCDC40Q4G0X9 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms