Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.07
CCNA1P78396 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CCNA1P78396 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
CCNA1P78396 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCNA1P78396 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCNA1P78396 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCNA1P78396 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCNA1P78396 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCNA1P78396 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.7■■□□□ 1.06
CCNA1P78396 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CCNA1P78396 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.7■■□□□ 1.06
CCNA1P78396 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.7■■□□□ 1.06
CCNA1P78396 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCNA1P78396 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CCNA1P78396 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCNA1P78396 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCNA1P78396 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CCNA1P78396 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
CCNA1P78396 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CCNA1P78396 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.69■■□□□ 1.06
CCNA1P78396 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.69■■□□□ 1.06
CCNA1P78396 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.69■■□□□ 1.06
CCNA1P78396 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.69■■□□□ 1.06
CCNA1P78396 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
CCNA1P78396 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.69■■□□□ 1.06
CCNA1P78396 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCNA1P78396 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.68■■□□□ 1.06
CCNA1P78396 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCNA1P78396 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCNA1P78396 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCNA1P78396 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCNA1P78396 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCNA1P78396 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCNA1P78396 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCNA1P78396 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.68■■□□□ 1.06
CCNA1P78396 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.68■■□□□ 1.06
CCNA1P78396 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCNA1P78396 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCNA1P78396 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC21.68■■□□□ 1.06
CCNA1P78396 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.68■■□□□ 1.06
CCNA1P78396 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCNA1P78396 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CCNA1P78396 SDHAP1-207ENST00000440850 2000 ntBASIC21.68■■□□□ 1.06
CCNA1P78396 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.68■■□□□ 1.06
CCNA1P78396 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.67■■□□□ 1.06
CCNA1P78396 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCNA1P78396 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCNA1P78396 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.67■■□□□ 1.06
CCNA1P78396 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.67■■□□□ 1.06
CCNA1P78396 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCNA1P78396 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCNA1P78396 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.67■■□□□ 1.06
CCNA1P78396 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.67■■□□□ 1.06
CCNA1P78396 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CCNA1P78396 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC21.67■■□□□ 1.06
CCNA1P78396 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.67■■□□□ 1.06
CCNA1P78396 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
CCNA1P78396 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.67■■□□□ 1.06
CCNA1P78396 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCNA1P78396 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.67■■□□□ 1.06
CCNA1P78396 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCNA1P78396 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.67■■□□□ 1.06
CCNA1P78396 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.66■■□□□ 1.06
CCNA1P78396 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.66■■□□□ 1.06
CCNA1P78396 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 AC016734.2-201ENST00000624325 1377 ntBASIC21.66■■□□□ 1.06
CCNA1P78396 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CCNA1P78396 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.66■■□□□ 1.06
CCNA1P78396 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC21.66■■□□□ 1.06
CCNA1P78396 AC111152.3-201ENST00000569699 673 ntBASIC21.66■■□□□ 1.06
CCNA1P78396 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.66■■□□□ 1.06
CCNA1P78396 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21.66■■□□□ 1.06
CCNA1P78396 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 AC099778.1-201ENST00000568593 1911 ntBASIC21.66■■□□□ 1.06
CCNA1P78396 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.66■■□□□ 1.06
CCNA1P78396 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCNA1P78396 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CCNA1P78396 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCNA1P78396 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms