Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC14.82□□□□□ -0.04
COL6A5A8TX70 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A5A8TX70 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A5A8TX70 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A5A8TX70 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A5A8TX70 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL6A5A8TX70 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A5A8TX70 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A5A8TX70 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 DDT-203ENST00000403754 569 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A5A8TX70 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A5A8TX70 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A5A8TX70 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A5A8TX70 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A5A8TX70 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A5A8TX70 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 AL096865.1-201ENST00000606796 927 ntBASIC14.81□□□□□ -0.04
COL6A5A8TX70 AL355877.3-201ENST00000622820 899 ntBASIC14.81□□□□□ -0.04
COL6A5A8TX70 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A5A8TX70 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A5A8TX70 UBC-206ENST00000538617 1303 ntTSL 5 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.81□□□□□ -0.04
COL6A5A8TX70 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL6A5A8TX70 PHGDH-210ENST00000641115 1638 ntBASIC14.81□□□□□ -0.04
COL6A5A8TX70 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
COL6A5A8TX70 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC14.8□□□□□ -0.04
COL6A5A8TX70 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.8□□□□□ -0.04
COL6A5A8TX70 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.8□□□□□ -0.04
COL6A5A8TX70 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC14.8□□□□□ -0.04
COL6A5A8TX70 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.8□□□□□ -0.04
COL6A5A8TX70 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
COL6A5A8TX70 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
COL6A5A8TX70 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 KRT18P23-201ENST00000435622 1283 ntBASIC14.8□□□□□ -0.04
COL6A5A8TX70 COX20P2-201ENST00000452636 358 ntBASIC14.8□□□□□ -0.04
COL6A5A8TX70 AC190387.1-201ENST00000551683 408 ntBASIC14.8□□□□□ -0.04
COL6A5A8TX70 AC005332.3-201ENST00000589904 676 ntBASIC14.8□□□□□ -0.04
COL6A5A8TX70 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC14.8□□□□□ -0.04
COL6A5A8TX70 AL035252.4-201ENST00000624174 288 ntBASIC14.8□□□□□ -0.04
COL6A5A8TX70 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.8□□□□□ -0.04
COL6A5A8TX70 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL6A5A8TX70 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC14.8□□□□□ -0.04
COL6A5A8TX70 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A5A8TX70 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 MTDHP5-201ENST00000598980 586 ntBASIC14.79□□□□□ -0.04
COL6A5A8TX70 AC106028.4-201ENST00000614509 607 ntBASIC14.79□□□□□ -0.04
COL6A5A8TX70 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A5A8TX70 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A5A8TX70 CCS-201ENST00000310190 942 ntTSL 5 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A5A8TX70 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A5A8TX70 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL6A5A8TX70 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 AC002347.1-201ENST00000569543 541 ntBASIC14.79□□□□□ -0.04
COL6A5A8TX70 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC14.79□□□□□ -0.04
COL6A5A8TX70 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL6A5A8TX70 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC14.78□□□□□ -0.04
COL6A5A8TX70 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms