Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 WWOX-216ENST00000569818 525 ntBASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.48■□□□□ 0.87
SMIM28A0A1B0GU29 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 YBX1P2-201ENST00000489612 999 ntBASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMIM28A0A1B0GU29 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 ARMC10P1-201ENST00000313754 855 ntBASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 RNF152P1-201ENST00000397754 604 ntBASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 AC063952.2-201ENST00000498792 1227 ntBASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 NTF6B-201ENST00000591913 560 ntBASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 AC011558.1-201ENST00000623459 338 ntBASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.46■□□□□ 0.87
SMIM28A0A1B0GU29 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.87
SMIM28A0A1B0GU29 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.45■□□□□ 0.87
SMIM28A0A1B0GU29 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMIM28A0A1B0GU29 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 KRT8P3-201ENST00000519669 1449 ntBASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 AC093484.2-201ENST00000580996 2166 ntBASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 TSPY5P-201ENST00000426936 936 ntBASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 GPAT2P1-201ENST00000444924 1672 ntBASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMIM28A0A1B0GU29 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms