Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 RPL23AP83-201ENST00000434984 473 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 MTND1P1-201ENST00000445453 368 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AC022364.2-201ENST00000457963 554 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AC087588.1-201ENST00000462203 316 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AC126389.1-201ENST00000477436 290 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AC108078.2-201ENST00000510750 236 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 Y_RNA.689-201ENST00000516589 107 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AP001646.1-201ENST00000527936 915 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 MIR3186-201ENST00000577404 85 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 MIR5047-201ENST00000579212 100 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 U3.45-201ENST00000607547 219 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 RMST_8.1-201ENST00000610287 165 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AC130324.3-201ENST00000614165 542 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AC073534.2-201ENST00000620377 381 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 PLCE1P1-201ENST00000622094 305 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AL357559.1-201ENST00000622228 274 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 U6.98-201ENST00000637157 84 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AC099654.12-201ENST00000639868 649 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AL732372.2-225ENST00000642124 456 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 AC073073.2-201ENST00000609827 2578 ntBASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
HCN3Q9P1Z3 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 SNORD46.1-201ENST00000364139 104 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 RNU6-1215P-201ENST00000384441 102 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 MIR449B-201ENST00000384995 97 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 RNU6-817P-201ENST00000391083 104 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 MTHFD2P2-201ENST00000407725 247 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 RPS12P24-201ENST00000412619 387 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AC092809.3-201ENST00000415453 231 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 MTATP6P18-201ENST00000417994 673 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AC012498.1-201ENST00000424037 437 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 RPL23AP69-201ENST00000431134 458 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AL591212.2-201ENST00000433923 257 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 RPS29P31-201ENST00000446147 164 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 HMGB3P8-201ENST00000449709 577 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 RNU6-420P-201ENST00000458780 107 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AC006512.1-201ENST00000468816 291 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AL135752.1-201ENST00000479477 471 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 RNU6-1282P-201ENST00000516735 96 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 RNU6-928P-201ENST00000516876 104 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 MTCYBP20-201ENST00000524239 1129 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AP003072.2-201ENST00000527756 676 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 OR5AL2P-201ENST00000532185 920 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 OR5B10P-201ENST00000532869 642 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AC146944.4-201ENST00000602697 718 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 HSPE1P7-201ENST00000604681 321 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 MIR7851-201ENST00000610611 160 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 AL359740.1-201ENST00000624340 592 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 MTND5P42-201ENST00000637720 498 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 MIR7153-201ENST00000637758 57 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 MTND5P29-201ENST00000458676 1807 ntBASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HCN3Q9P1Z3 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 SNORA62.1-201ENST00000364287 154 ntBASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 RNU6-74P-201ENST00000384235 107 ntBASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 RNA5SP38-201ENST00000410750 119 ntBASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 DPPA2P1-201ENST00000428060 556 ntBASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 MTND1P34-201ENST00000438556 671 ntBASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 BNIP3P2-201ENST00000441221 577 ntBASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 DDX3P2-201ENST00000446138 111 ntBASIC3.36□□□□□ -1.87
HCN3Q9P1Z3 RPL21P23-201ENST00000446654 460 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms