Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 USP9YP29-201ENST00000445112 563 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AP000936.2-201ENST00000447151 681 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AC020550.1-201ENST00000447385 163 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 RPL27AP5-201ENST00000469428 449 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 RPL21P13-201ENST00000488305 481 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AC010587.1-201ENST00000505809 469 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AC068135.2-201ENST00000569293 1028 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AC119751.7-201ENST00000600494 245 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 SEPT7P9-203ENST00000604116 343 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AL358072.1-201ENST00000604156 575 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 AC103710.2-201ENST00000609912 942 ntBASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
NUP54Q7Z3B4 SNORA63.1-201ENST00000362493 131 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 U8.3-201ENST00000363321 132 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 RNA5SP197-201ENST00000363357 119 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 RNU6-511P-201ENST00000363496 107 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 U3.11-201ENST00000364476 212 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 RNA5SP267-201ENST00000364893 126 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 U3.19-201ENST00000390893 196 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 RNU6-248P-201ENST00000410720 107 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 ZNF863P-201ENST00000426746 417 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AL451062.2-201ENST00000427515 271 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC137499.1-201ENST00000427602 88 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC119618.1-201ENST00000434191 222 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 UBBP3-201ENST00000445497 241 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 MTND1P29-201ENST00000448112 647 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC008155.2-201ENST00000464337 397 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 RPL7P49-201ENST00000471402 708 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 RPS4XP22-201ENST00000480755 780 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC138853.1-201ENST00000503549 823 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 ARL2BPP4-201ENST00000506854 471 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 MTND4P2-201ENST00000507767 1203 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC074250.1-201ENST00000511117 192 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 RNU2-46P-201ENST00000517038 113 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC011979.2-201ENST00000527568 352 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 RSL24D1P11-201ENST00000591045 491 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC002545.1-201ENST00000592511 181 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AP000860.1-201ENST00000605250 559 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 RN7SKP299-201ENST00000606679 301 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC093783.1-201ENST00000612976 329 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC006338.1-201ENST00000618453 749 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC004777.1-201ENST00000624317 287 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 PISRT1-201ENST00000626175 531 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AC090582.1-201ENST00000636321 199 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 AL355596.1-201ENST00000565399 3996 ntBASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
NUP54Q7Z3B4 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 FARSBP1-201ENST00000435808 1778 ntBASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 RNU5E-1-201ENST00000362477 120 ntBASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 RNA5SP383-201ENST00000362934 120 ntBASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 RNU6-805P-201ENST00000365643 106 ntBASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 RNU6-217P-201ENST00000384164 104 ntBASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 RNU2-33P-201ENST00000410344 192 ntBASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 AL158156.1-201ENST00000422509 473 ntBASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 AC091390.3-201ENST00000426478 338 ntBASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 HMGB3P11-201ENST00000440127 604 ntBASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 USP9YP15-201ENST00000442391 422 ntBASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 MTCO1P19-201ENST00000443487 500 ntBASIC3.05□□□□□ -1.92
NUP54Q7Z3B4 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms