Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SNORD114-21-201ENST00000606412 72 ntBASIC0.98□□□□□ -2.25
COL6A3P12111 Xist_exon1.1-201ENST00000618930 85 ntBASIC0.98□□□□□ -2.25
COL6A3P12111 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC0.98□□□□□ -2.25
COL6A3P12111 AC103710.2-202ENST00000641454 2853 ntBASIC0.98□□□□□ -2.25
COL6A3P12111 LINC01347-201ENST00000417964 355 ntBASIC0.98□□□□□ -2.25
COL6A3P12111 GTF2IP12-201ENST00000456547 356 ntBASIC0.98□□□□□ -2.25
COL6A3P12111 AC008676.3-201ENST00000521237 435 ntBASIC0.98□□□□□ -2.25
COL6A3P12111 AC067863.3-201ENST00000624172 122 ntBASIC0.98□□□□□ -2.25
COL6A3P12111 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC0.98□□□□□ -2.25
COL6A3P12111 AL357134.1-201ENST00000445848 426 ntBASIC0.98□□□□□ -2.25
COL6A3P12111 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
COL6A3P12111 ATG12P2-201ENST00000456830 416 ntBASIC0.98□□□□□ -2.25
COL6A3P12111 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC0.98□□□□□ -2.25
COL6A3P12111 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.97□□□□□ -2.25
COL6A3P12111 NACAP2-201ENST00000318548 624 ntBASIC0.97□□□□□ -2.25
COL6A3P12111 RNU6-452P-201ENST00000384406 107 ntBASIC0.97□□□□□ -2.25
COL6A3P12111 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.97□□□□□ -2.25
COL6A3P12111 RPL30P12-201ENST00000474666 353 ntBASIC0.97□□□□□ -2.25
COL6A3P12111 Clostridiales-1.3-201ENST00000637703 147 ntBASIC0.97□□□□□ -2.25
COL6A3P12111 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
COL6A3P12111 RNU6ATAC39P-201ENST00000516309 149 ntBASIC0.97□□□□□ -2.25
COL6A3P12111 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC0.97□□□□□ -2.25
COL6A3P12111 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC0.97□□□□□ -2.25
COL6A3P12111 Y_RNA.468-201ENST00000384298 102 ntBASIC0.96□□□□□ -2.26
COL6A3P12111 MIR150-201ENST00000385048 84 ntBASIC0.96□□□□□ -2.26
COL6A3P12111 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
COL6A3P12111 AP000949.1-201ENST00000438328 629 ntBASIC0.96□□□□□ -2.26
COL6A3P12111 COX6CP18-201ENST00000448769 222 ntBASIC0.96□□□□□ -2.26
COL6A3P12111 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.96□□□□□ -2.26
COL6A3P12111 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC0.96□□□□□ -2.26
COL6A3P12111 AC010889.1-201ENST00000566193 2666 ntBASIC0.96□□□□□ -2.26
COL6A3P12111 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
COL6A3P12111 Y_RNA.352-201ENST00000365439 102 ntBASIC0.96□□□□□ -2.26
COL6A3P12111 AL022718.1-201ENST00000412004 84 ntBASIC0.96□□□□□ -2.26
COL6A3P12111 UBE2FP3-201ENST00000436366 524 ntBASIC0.96□□□□□ -2.26
COL6A3P12111 FO393415.2-201ENST00000480085 343 ntBASIC0.96□□□□□ -2.26
COL6A3P12111 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC0.96□□□□□ -2.26
COL6A3P12111 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
COL6A3P12111 BX682237.1-201ENST00000415016 335 ntBASIC0.96□□□□□ -2.26
COL6A3P12111 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.96□□□□□ -2.26
COL6A3P12111 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC0.96□□□□□ -2.26
COL6A3P12111 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC0.96□□□□□ -2.26
COL6A3P12111 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC0.96□□□□□ -2.26
COL6A3P12111 MIR6835-201ENST00000621552 64 ntBASIC0.96□□□□□ -2.26
COL6A3P12111 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC0.95□□□□□ -2.26
COL6A3P12111 AC008379.1-201ENST00000463655 464 ntBASIC0.95□□□□□ -2.26
COL6A3P12111 BLNK-209ENST00000495266 440 ntTSL 5 BASIC0.95□□□□□ -2.26
COL6A3P12111 AC026801.1-201ENST00000497178 464 ntBASIC0.95□□□□□ -2.26
COL6A3P12111 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC0.95□□□□□ -2.26
COL6A3P12111 AC093788.1-201ENST00000609356 927 ntBASIC0.95□□□□□ -2.26
COL6A3P12111 RNA5SP276-201ENST00000362580 94 ntBASIC0.95□□□□□ -2.26
COL6A3P12111 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
COL6A3P12111 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC0.95□□□□□ -2.26
COL6A3P12111 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC0.95□□□□□ -2.26
COL6A3P12111 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC0.95□□□□□ -2.26
COL6A3P12111 AC009452.1-201ENST00000640823 606 ntBASIC0.95□□□□□ -2.26
COL6A3P12111 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC0.95□□□□□ -2.26
COL6A3P12111 SNORA67.1-201ENST00000364749 141 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 UBE2V1P9-201ENST00000414760 368 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC0.94□□□□□ -2.26
COL6A3P12111 AC012497.1-201ENST00000429392 575 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 BZW1P2-201ENST00000473537 826 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 AC013244.2-201ENST00000603396 103 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 SNRPGP17-201ENST00000603780 214 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 AC135178.6-201ENST00000605314 398 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 AL139397.2-201ENST00000404529 772 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 MTCO1P3-201ENST00000429327 192 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 AC104308.1-201ENST00000454621 333 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC0.94□□□□□ -2.26
COL6A3P12111 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC0.94□□□□□ -2.26
COL6A3P12111 AC114322.1-201ENST00000506771 926 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC0.94□□□□□ -2.26
COL6A3P12111 MIR4653-201ENST00000585107 83 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 FAM71BP1-201ENST00000604431 523 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 MIR198-201ENST00000637333 62 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
COL6A3P12111 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.94□□□□□ -2.26
COL6A3P12111 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC0.94□□□□□ -2.26
COL6A3P12111 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC0.94□□□□□ -2.26
COL6A3P12111 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC0.94□□□□□ -2.26
COL6A3P12111 HMGB1P24-202ENST00000615653 685 ntBASIC0.94□□□□□ -2.26
COL6A3P12111 MTND4P27-201ENST00000450813 1354 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
COL6A3P12111 RNU6-997P-201ENST00000384725 107 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 MIR601-201ENST00000385256 79 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 OR51A5P-201ENST00000415429 942 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.93□□□□□ -2.26
COL6A3P12111 RBM43P1-201ENST00000476891 1081 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 UBE2L4-201ENST00000587688 464 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC0.93□□□□□ -2.26
COL6A3P12111 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
COL6A3P12111 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
COL6A3P12111 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
COL6A3P12111 RNU6-178P-201ENST00000384631 104 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 RNU2-40P-201ENST00000410833 196 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 VPS26BP1-201ENST00000417155 755 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 MTND2P16-201ENST00000419987 799 ntBASIC0.93□□□□□ -2.26
COL6A3P12111 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.93□□□□□ -2.26
COL6A3P12111 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC0.93□□□□□ -2.26
COL6A3P12111 AC092451.1-201ENST00000480211 153 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms