Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC104685.1-201ENST00000502445 371 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 AC105252.1-201ENST00000503089 286 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 AC024589.1-201ENST00000512207 263 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 SCARNA11.3-201ENST00000517276 130 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS39Q96JC1 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS39Q96JC1 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS39Q96JC1 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.77□□□□□ -1.97
VPS39Q96JC1 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS39Q96JC1 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS39Q96JC1 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 AC008277.2-201ENST00000605196 797 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 AC090186.1-201ENST00000605991 572 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 AC097468.3-201ENST00000607956 456 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 SDR42E1P2-201ENST00000614861 481 ntBASIC2.77□□□□□ -1.97
VPS39Q96JC1 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VPS39Q96JC1 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 MTND4P16-201ENST00000466108 1367 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 DDX43P2-201ENST00000604753 1354 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
VPS39Q96JC1 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
VPS39Q96JC1 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS39Q96JC1 AL391994.1-201ENST00000254724 282 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 RPL21P132-201ENST00000331267 462 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
VPS39Q96JC1 RNU6-723P-201ENST00000383973 107 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 RNU6-432P-201ENST00000384196 109 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 MIR491-201ENST00000384877 84 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 USP9YP13-201ENST00000417797 480 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 SNRPEP7-201ENST00000438350 220 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 AL160314.1-201ENST00000490836 438 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 Y_RNA.717-201ENST00000517106 92 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 ZNF321P-202ENST00000550843 495 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 AC009163.5-201ENST00000575421 637 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS39Q96JC1 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 TPMTP1-201ENST00000592307 737 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 AL356280.1-201ENST00000603614 379 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 AC239868.4-201ENST00000608318 671 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 TUG1_2.1-201ENST00000614234 87 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 CR381653.2-201ENST00000624041 768 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 AC007490.1-201ENST00000624321 703 ntBASIC2.76□□□□□ -1.97
VPS39Q96JC1 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS39Q96JC1 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS39Q96JC1 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS39Q96JC1 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS39Q96JC1 RNU6-1072P-201ENST00000384703 107 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 RNU6-443P-201ENST00000384780 107 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 SNORA11.1-201ENST00000408133 129 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 MIR320C1-201ENST00000408566 88 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 AL022400.1-201ENST00000423946 935 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 RPL35AP12-201ENST00000425362 338 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 AL593851.1-201ENST00000426171 157 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 SUMO1P4-201ENST00000429430 302 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 AL606662.1-201ENST00000445763 553 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 AP000542.1-201ENST00000448473 371 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 AC233279.1-201ENST00000455300 423 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 RPS27AP9-201ENST00000477681 438 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 AP001025.2-201ENST00000490908 477 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 NDUFB4P2-201ENST00000509515 391 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 SCARNA17.1-201ENST00000516211 143 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 SCARNA17.2-201ENST00000516334 143 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 SNORA74D-201ENST00000516404 141 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 LRRC34P1-201ENST00000542742 915 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS39Q96JC1 AC063944.3-201ENST00000609969 533 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 SCARNA17.4-201ENST00000614296 143 ntBASIC2.75□□□□□ -1.97
VPS39Q96JC1 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VPS39Q96JC1 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 183.2 ms