Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NRON-201ENST00000517270 370 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AP003392.2-201ENST00000527269 208 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AC087883.1-201ENST00000551882 391 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 RPS3AP4-201ENST00000555161 764 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 AC098614.4-201ENST00000607601 462 ntBASIC3.41□□□□□ -1.86
COL28A1Q2UY09 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL28A1Q2UY09 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
COL28A1Q2UY09 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 RNY1P12-201ENST00000364251 105 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 RNU6-169P-201ENST00000365336 107 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AL391417.1-201ENST00000404100 426 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 RNU6-195P-201ENST00000411352 109 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AL451054.2-201ENST00000420896 202 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AC133104.1-201ENST00000429100 218 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AC020550.1-201ENST00000447385 163 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 NANOGNBP1-201ENST00000448444 480 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 CEACAMP4-201ENST00000457676 421 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 Y_RNA.638-201ENST00000459374 113 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 SNRPGP3-201ENST00000469405 227 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 RN7SL330P-201ENST00000469709 307 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AC114797.1-201ENST00000514003 728 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 RN7SKP209-201ENST00000516888 304 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 RANP9-201ENST00000519957 271 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 SYF2P1-201ENST00000550658 413 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 EIF1P4-201ENST00000572664 335 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AC005951.2-201ENST00000576282 495 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AC106900.2-201ENST00000604994 317 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AL161734.1-201ENST00000609720 557 ntBASIC3.4□□□□□ -1.87
COL28A1Q2UY09 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
COL28A1Q2UY09 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 PWAR6-201ENST00000552334 4618 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 OR5J1P-201ENST00000313544 939 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 SNORD56.2-201ENST00000363242 71 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 RNU5E-6P-201ENST00000365574 115 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 RNU1-39P-201ENST00000383897 165 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 RNU6-259P-201ENST00000383999 107 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 SNORA48.8-201ENST00000391324 134 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 MIR1261-201ENST00000408659 82 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 U3.42-201ENST00000408746 214 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 BX295541.1-201ENST00000417774 250 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 ZNF90P2-204ENST00000419323 1075 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 YPEL5P1-201ENST00000419731 367 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL139413.1-201ENST00000421309 217 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC007283.2-201ENST00000424739 197 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 RPL31P35-201ENST00000431058 377 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC006028.1-201ENST00000438379 402 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 MTND1P34-201ENST00000438556 671 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 HMGB3P15-201ENST00000507326 574 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 RNU6-720P-201ENST00000516363 108 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC093331.1-201ENST00000521474 169 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC008011.1-201ENST00000545989 227 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 ARL2BPP2-201ENST00000550907 489 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL670379.6-201ENST00000603753 252 ntBASIC3.39□□□□□ -1.87
COL28A1Q2UY09 AL670379.11-201ENST00000604059 253 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms