Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL645638.1-201ENST00000440519 361 ntBASIC2.71□□□□□ -1.98
MSH6P52701 Z82190.1-201ENST00000454534 490 ntBASIC2.71□□□□□ -1.98
MSH6P52701 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH6P52701 AC104472.2-201ENST00000469035 601 ntBASIC2.71□□□□□ -1.98
MSH6P52701 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH6P52701 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH6P52701 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH6P52701 RNU6-276P-201ENST00000516114 96 ntBASIC2.71□□□□□ -1.98
MSH6P52701 RNU6-1225P-201ENST00000516336 65 ntBASIC2.71□□□□□ -1.98
MSH6P52701 OR5AK1P-201ENST00000524837 922 ntBASIC2.71□□□□□ -1.98
MSH6P52701 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH6P52701 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH6P52701 HIGD1AP17-201ENST00000554576 276 ntBASIC2.71□□□□□ -1.98
MSH6P52701 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC2.71□□□□□ -1.98
MSH6P52701 MIR4637-201ENST00000582405 84 ntBASIC2.71□□□□□ -1.98
MSH6P52701 AC005014.3-201ENST00000605985 190 ntBASIC2.71□□□□□ -1.98
MSH6P52701 AF129408.1-201ENST00000608767 431 ntBASIC2.71□□□□□ -1.98
MSH6P52701 AC011890.2-201ENST00000613393 294 ntBASIC2.71□□□□□ -1.98
MSH6P52701 AP000676.4-201ENST00000624659 623 ntBASIC2.71□□□□□ -1.98
MSH6P52701 AC004808.1-201ENST00000627671 721 ntBASIC2.71□□□□□ -1.98
MSH6P52701 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.71□□□□□ -1.98
MSH6P52701 AC013437.2-201ENST00000639587 677 ntBASIC2.71□□□□□ -1.98
MSH6P52701 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.71□□□□□ -1.98
MSH6P52701 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
MSH6P52701 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.7□□□□□ -1.98
MSH6P52701 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
MSH6P52701 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.7□□□□□ -1.98
MSH6P52701 RNU5D-1-201ENST00000363299 116 ntBASIC2.7□□□□□ -1.98
MSH6P52701 RNU5E-10P-201ENST00000363506 118 ntBASIC2.7□□□□□ -1.98
MSH6P52701 RNU6-1155P-201ENST00000363554 107 ntBASIC2.7□□□□□ -1.98
MSH6P52701 SNORA67.5-201ENST00000391036 107 ntBASIC2.7□□□□□ -1.98
MSH6P52701 AL355143.1-201ENST00000407101 841 ntBASIC2.7□□□□□ -1.98
MSH6P52701 RNU2-47P-201ENST00000410649 186 ntBASIC2.7□□□□□ -1.98
MSH6P52701 AP000275.1-201ENST00000411943 390 ntBASIC2.7□□□□□ -1.98
MSH6P52701 Z75741.2-201ENST00000417272 1167 ntBASIC2.7□□□□□ -1.98
MSH6P52701 MRPS36P1-201ENST00000421291 307 ntBASIC2.7□□□□□ -1.98
MSH6P52701 AC007742.1-201ENST00000425789 329 ntBASIC2.7□□□□□ -1.98
MSH6P52701 ELOCP26-201ENST00000436067 329 ntBASIC2.7□□□□□ -1.98
MSH6P52701 MTCYBP34-201ENST00000439552 670 ntBASIC2.7□□□□□ -1.98
MSH6P52701 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC2.7□□□□□ -1.98
MSH6P52701 MTND2P20-201ENST00000440805 661 ntBASIC2.7□□□□□ -1.98
MSH6P52701 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH6P52701 AC026410.2-201ENST00000460281 156 ntBASIC2.7□□□□□ -1.98
MSH6P52701 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH6P52701 AC108734.3-201ENST00000481241 1165 ntBASIC2.7□□□□□ -1.98
MSH6P52701 AC090453.1-201ENST00000495560 436 ntBASIC2.7□□□□□ -1.98
MSH6P52701 AIG1P1-201ENST00000503376 148 ntBASIC2.7□□□□□ -1.98
MSH6P52701 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH6P52701 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH6P52701 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH6P52701 AC113347.3-201ENST00000509113 148 ntBASIC2.7□□□□□ -1.98
MSH6P52701 AC091163.3-201ENST00000518269 1144 ntBASIC2.7□□□□□ -1.98
MSH6P52701 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.7□□□□□ -1.98
MSH6P52701 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH6P52701 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH6P52701 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.7□□□□□ -1.98
MSH6P52701 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC2.7□□□□□ -1.98
MSH6P52701 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.7□□□□□ -1.98
MSH6P52701 MTND3P13-201ENST00000574391 343 ntBASIC2.7□□□□□ -1.98
MSH6P52701 MIR4303-201ENST00000581299 66 ntBASIC2.7□□□□□ -1.98
MSH6P52701 DUXAP4-201ENST00000603046 613 ntBASIC2.7□□□□□ -1.98
MSH6P52701 AC104763.3-201ENST00000613765 618 ntBASIC2.7□□□□□ -1.98
MSH6P52701 FO624990.1-201ENST00000636373 85 ntBASIC2.7□□□□□ -1.98
MSH6P52701 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.7□□□□□ -1.98
MSH6P52701 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
MSH6P52701 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSH6P52701 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
MSH6P52701 CDR1-202ENST00000625883 1485 ntBASIC2.69□□□□□ -1.98
MSH6P52701 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH6P52701 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH6P52701 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH6P52701 Y_RNA.408-201ENST00000383987 102 ntBASIC2.69□□□□□ -1.98
MSH6P52701 MIR9-3-201ENST00000385084 90 ntBASIC2.69□□□□□ -1.98
MSH6P52701 RNU6-1176P-201ENST00000390955 107 ntBASIC2.69□□□□□ -1.98
MSH6P52701 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
MSH6P52701 AL592310.1-201ENST00000414330 671 ntBASIC2.69□□□□□ -1.98
MSH6P52701 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH6P52701 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC2.69□□□□□ -1.98
MSH6P52701 AL590233.1-201ENST00000430017 456 ntBASIC2.69□□□□□ -1.98
MSH6P52701 HMGB1P27-201ENST00000431429 603 ntBASIC2.69□□□□□ -1.98
MSH6P52701 MTND2P5-201ENST00000432656 1006 ntBASIC2.69□□□□□ -1.98
MSH6P52701 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH6P52701 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC2.69□□□□□ -1.98
MSH6P52701 AL353691.1-201ENST00000451332 387 ntBASIC2.69□□□□□ -1.98
MSH6P52701 RPS15AP17-201ENST00000470598 390 ntBASIC2.69□□□□□ -1.98
MSH6P52701 AP000852.1-201ENST00000472460 573 ntBASIC2.69□□□□□ -1.98
MSH6P52701 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC2.69□□□□□ -1.98
MSH6P52701 HMGB1P28-201ENST00000507778 552 ntBASIC2.69□□□□□ -1.98
MSH6P52701 TTC39CP1-201ENST00000512513 755 ntBASIC2.69□□□□□ -1.98
MSH6P52701 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH6P52701 RPS3AP4-201ENST00000555161 764 ntBASIC2.69□□□□□ -1.98
MSH6P52701 MED28P6-201ENST00000558776 231 ntBASIC2.69□□□□□ -1.98
MSH6P52701 RPL23AP78-201ENST00000599928 470 ntBASIC2.69□□□□□ -1.98
MSH6P52701 AC080013.4-201ENST00000607624 649 ntBASIC2.69□□□□□ -1.98
MSH6P52701 AP003122.6-201ENST00000623831 495 ntBASIC2.69□□□□□ -1.98
MSH6P52701 MIR1322-201ENST00000638013 71 ntBASIC2.69□□□□□ -1.98
MSH6P52701 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSH6P52701 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.69□□□□□ -1.98
MSH6P52701 AP002907.1-201ENST00000606361 1430 ntBASIC2.69□□□□□ -1.98
MSH6P52701 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms