Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PTPN9P43378 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.54□□□□□ -1.84
PTPN9P43378 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.54□□□□□ -1.84
PTPN9P43378 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
PTPN9P43378 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PTPN9P43378 GABPAP-201ENST00000419271 1356 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 AC073343.1-201ENST00000328239 651 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 RNU6-960P-201ENST00000364056 120 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
PTPN9P43378 AC126124.2-201ENST00000413542 321 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.54□□□□□ -1.84
PTPN9P43378 CYCSP43-201ENST00000438233 310 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 HMGB1P12-201ENST00000438594 598 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.54□□□□□ -1.84
PTPN9P43378 GAPDHP27-201ENST00000447427 1020 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.54□□□□□ -1.84
PTPN9P43378 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.54□□□□□ -1.84
PTPN9P43378 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.54□□□□□ -1.84
PTPN9P43378 AC010631.1-201ENST00000474150 156 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.54□□□□□ -1.84
PTPN9P43378 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.54□□□□□ -1.84
PTPN9P43378 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.54□□□□□ -1.84
PTPN9P43378 RNA5SP468-201ENST00000516782 93 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 MIR2276-201ENST00000516886 89 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 NDUFB9P3-201ENST00000521269 501 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 SUB1P2-201ENST00000556401 297 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.54□□□□□ -1.84
PTPN9P43378 ZNF192P1-203ENST00000565888 810 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.54□□□□□ -1.84
PTPN9P43378 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.54□□□□□ -1.84
PTPN9P43378 AL391646.1-201ENST00000603860 190 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 AL136363.1-201ENST00000605349 337 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 AC126118.1-201ENST00000607744 628 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 AC004696.1-201ENST00000614345 607 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 SDR42E1P2-201ENST00000614861 481 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.54□□□□□ -1.84
PTPN9P43378 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.54□□□□□ -1.84
PTPN9P43378 SEPT14P19-203ENST00000633205 211 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 LRRC77P-213ENST00000637727 880 ntBASIC3.54□□□□□ -1.84
PTPN9P43378 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.54□□□□□ -1.84
PTPN9P43378 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.54□□□□□ -1.84
PTPN9P43378 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.54□□□□□ -1.84
PTPN9P43378 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
PTPN9P43378 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.54□□□□□ -1.84
PTPN9P43378 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.54□□□□□ -1.84
PTPN9P43378 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
PTPN9P43378 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PTPN9P43378 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.53□□□□□ -1.84
PTPN9P43378 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
PTPN9P43378 RNU6-1120P-201ENST00000362988 108 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 Y_RNA.159-201ENST00000363674 87 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 RNU1-39P-201ENST00000383897 165 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 MTATP6P18-201ENST00000417994 673 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.53□□□□□ -1.84
PTPN9P43378 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.53□□□□□ -1.84
PTPN9P43378 HMGB3P12-201ENST00000438745 556 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.53□□□□□ -1.84
PTPN9P43378 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.53□□□□□ -1.84
PTPN9P43378 RN7SL432P-201ENST00000484057 298 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 AC093663.1-201ENST00000497190 394 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 AC019235.1-201ENST00000503847 207 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 PHBP14-201ENST00000512887 367 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 SCARNA24.1-201ENST00000516465 137 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 RNU6-1092P-201ENST00000516955 87 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 RNU6-1220P-201ENST00000517126 108 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC3.53□□□□□ -1.84
PTPN9P43378 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.53□□□□□ -1.84
PTPN9P43378 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.53□□□□□ -1.84
PTPN9P43378 AL512310.1-201ENST00000548639 172 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 ARL2BPP2-201ENST00000550907 489 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 AC005476.1-201ENST00000554427 397 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.53□□□□□ -1.84
PTPN9P43378 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.53□□□□□ -1.84
PTPN9P43378 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.53□□□□□ -1.84
PTPN9P43378 AC010133.1-201ENST00000615809 842 ntBASIC3.53□□□□□ -1.84
PTPN9P43378 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
PTPN9P43378 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
PTPN9P43378 RNU6-50P-201ENST00000362356 103 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 Y_RNA.22-201ENST00000362492 102 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 RNA5SP197-201ENST00000363357 119 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 Y_RNA.481-201ENST00000384373 102 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 RNU6-456P-201ENST00000384493 107 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 MIR449B-201ENST00000384995 97 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 CIR1P3-201ENST00000405137 479 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 RN7SKP285-201ENST00000410137 318 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 RNU2-36P-201ENST00000410361 191 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.52□□□□□ -1.85
PTPN9P43378 AL356968.1-201ENST00000416622 474 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 ZNF90P2-204ENST00000419323 1075 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 BX842559.1-201ENST00000419615 532 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.52□□□□□ -1.85
PTPN9P43378 RAC1P6-201ENST00000423911 575 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 USP9YP18-201ENST00000425912 695 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AC008850.1-201ENST00000427546 362 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.52□□□□□ -1.85
PTPN9P43378 RPS20P5-201ENST00000434808 360 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.52□□□□□ -1.85
PTPN9P43378 MTATP6P13-201ENST00000438531 667 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 VN1R34P-201ENST00000447387 883 ntBASIC3.52□□□□□ -1.85
PTPN9P43378 RPL23AP20-201ENST00000447965 421 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms