Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.72□□□□□ -1.65
COL8A1P27658 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC4.72□□□□□ -1.65
COL8A1P27658 TOMM22P6-201ENST00000465035 409 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 RN7SL41P-201ENST00000476144 297 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 RNU6-589P-201ENST00000516485 107 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 AC024940.3-201ENST00000538551 316 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.72□□□□□ -1.65
COL8A1P27658 AC133555.2-201ENST00000550213 292 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 SNORD91B-202ENST00000608459 222 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.72□□□□□ -1.65
COL8A1P27658 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL8A1P27658 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC4.72□□□□□ -1.65
COL8A1P27658 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL8A1P27658 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC4.72□□□□□ -1.65
COL8A1P27658 CPS1-IT1-201ENST00000628368 2306 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.72□□□□□ -1.65
COL8A1P27658 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.72□□□□□ -1.65
COL8A1P27658 MTND5P32-201ENST00000560711 1802 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL8A1P27658 SAGE4P-201ENST00000442271 3381 ntBASIC4.71□□□□□ -1.65
COL8A1P27658 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
COL8A1P27658 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.65
COL8A1P27658 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.65
COL8A1P27658 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL8A1P27658 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL8A1P27658 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL8A1P27658 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL8A1P27658 MAPK10-338ENST00000641647 3362 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL8A1P27658 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
COL8A1P27658 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL8A1P27658 RNA5SP391-201ENST00000363456 119 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 RNU6-899P-201ENST00000363947 107 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 RNU6-275P-201ENST00000364910 107 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.71□□□□□ -1.66
COL8A1P27658 RNU6-76P-201ENST00000384060 104 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
COL8A1P27658 SNORA48.7-201ENST00000391302 135 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 LAP3P1-201ENST00000403648 294 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 SNORD56-201ENST00000413522 71 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 RPL18P10-201ENST00000425606 538 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 WARS2P1-201ENST00000429678 537 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.71□□□□□ -1.66
COL8A1P27658 RN7SL604P-201ENST00000492589 296 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.71□□□□□ -1.66
COL8A1P27658 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC4.71□□□□□ -1.66
COL8A1P27658 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.71□□□□□ -1.66
COL8A1P27658 AC136624.4-201ENST00000573044 370 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 MIR4284-201ENST00000578924 81 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 DNAJC19P2-201ENST00000593340 302 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 CDC42EP3P1-201ENST00000601004 764 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 AL162431.4-201ENST00000604674 411 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
COL8A1P27658 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.71□□□□□ -1.66
COL8A1P27658 AL138820.1-201ENST00000617901 5305 ntBASIC4.71□□□□□ -1.66
COL8A1P27658 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL8A1P27658 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL8A1P27658 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL8A1P27658 TEK-205ENST00000615002 4666 ntTSL 5 BASIC4.71□□□□□ -1.66
COL8A1P27658 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.66
COL8A1P27658 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
COL8A1P27658 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 AP005432.1-201ENST00000580891 3485 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 AC008758.3-201ENST00000507003 1829 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL8A1P27658 AC000374.1-201ENST00000434698 1745 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 AC079741.1-201ENST00000321498 212 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-222P-201ENST00000362438 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-37P-201ENST00000362692 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-11P-201ENST00000364234 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-7-201ENST00000364784 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-8-201ENST00000365467 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 Y_RNA.369-201ENST00000365568 117 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU4-17P-201ENST00000365598 141 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-25P-201ENST00000383873 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-1-201ENST00000383898 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-36P-201ENST00000384172 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-4P-201ENST00000384205 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-5P-201ENST00000384238 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-3P-201ENST00000384314 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-16P-201ENST00000384385 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-15P-201ENST00000384534 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-2-201ENST00000384627 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-29P-201ENST00000384637 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RNU6-9-201ENST00000384776 107 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 MIR23B-201ENST00000384832 97 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 AL009179.1-201ENST00000406085 265 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.7□□□□□ -1.66
COL8A1P27658 AC234781.4-201ENST00000419384 244 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 AL031736.2-201ENST00000426573 787 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 HMGB1P27-201ENST00000431429 603 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.7□□□□□ -1.66
COL8A1P27658 RPS15AP7-201ENST00000439294 405 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 AC009237.7-201ENST00000447357 229 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RPS29P27-201ENST00000463711 170 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 RPL7AP28-201ENST00000464513 571 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 HMGB3P16-201ENST00000508037 287 ntBASIC4.7□□□□□ -1.66
COL8A1P27658 FCF1P8-201ENST00000510322 597 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms