Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU6-1167P-201ENST00000363227 94 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 RNU6-1059P-201ENST00000363752 98 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 RNU6-335P-201ENST00000364563 113 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 Y_RNA.364-201ENST00000365532 101 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 RNU6-1179P-201ENST00000384667 107 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
HOXA3O43365 RNU2-3P-201ENST00000410144 191 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 RN7SKP16-201ENST00000410180 299 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA3O43365 AL353621.1-201ENST00000418219 243 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 TOMM22P1-201ENST00000418578 312 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 MTCYBP10-201ENST00000424905 650 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 USMG5P1-201ENST00000425964 177 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA3O43365 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA3O43365 RANP8-201ENST00000444720 713 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 RPL12P25-201ENST00000455592 494 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 snoU13.24-201ENST00000458998 104 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 RPL7P5-201ENST00000471472 736 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA3O43365 AC083829.1-201ENST00000503756 657 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 HMGB1P22-201ENST00000505315 124 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 AC008716.1-201ENST00000511084 513 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 RNU6-120P-201ENST00000516077 103 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 SCARNA16.2-201ENST00000516520 172 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA3O43365 AC104576.1-201ENST00000524225 88 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 COX6CP5-201ENST00000527162 228 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 AL352979.3-201ENST00000553515 247 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA3O43365 LRRC37A5P-203ENST00000580181 585 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 OR1M4P-201ENST00000589199 287 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 AC098826.3-201ENST00000603823 466 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 AC107294.1-201ENST00000609524 467 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 AC131238.1-201ENST00000617135 328 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 AC015914.2-201ENST00000618167 288 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 BX005214.3-202ENST00000619809 325 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 U3.53-201ENST00000628922 216 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA3O43365 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA3O43365 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA3O43365 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA3O43365 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA3O43365 GHR-213ENST00000622294 4312 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA3O43365 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
HOXA3O43365 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA3O43365 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA3O43365 AC092435.4-201ENST00000623012 4159 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.76□□□□□ -1.81
HOXA3O43365 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA3O43365 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA3O43365 EOGT-210ENST00000615922 1931 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 OR56B2P-202ENST00000641377 2453 ntBASIC3.76□□□□□ -1.81
HOXA3O43365 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA3O43365 AC107068.1-201ENST00000563286 4218 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
HOXA3O43365 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA3O43365 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA3O43365 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.75□□□□□ -1.81
HOXA3O43365 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA3O43365 AC005183.1-201ENST00000603687 1979 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA3O43365 Y_RNA.324-201ENST00000365165 102 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
HOXA3O43365 MIR568-201ENST00000385036 95 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 MIR301A-201ENST00000385261 86 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 SNORD73A-201ENST00000386062 65 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA3O43365 UBE2D3P2-201ENST00000424409 445 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 AC008267.5-201ENST00000424928 265 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 AC091390.3-201ENST00000426478 338 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 AL732292.1-201ENST00000426692 226 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 RSL24D1P6-201ENST00000426934 401 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA3O43365 RPL23AP50-201ENST00000434149 455 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA3O43365 RPS24P13-201ENST00000442520 397 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 FTH1P25-201ENST00000447665 469 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC3.75□□□□□ -1.81
HOXA3O43365 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA3O43365 AC022493.1-201ENST00000492984 337 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA3O43365 AC022493.2-201ENST00000506122 481 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 RN7SKP122-201ENST00000515923 296 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 RNU6-764P-201ENST00000516396 105 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 RNU6-1315P-201ENST00000517187 99 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA3O43365 MIR4503-201ENST00000582187 83 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
HOXA3O43365 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA3O43365 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA3O43365 AL161798.1-201ENST00000604630 131 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 SNORD39.4-201ENST00000620099 78 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 AP005019.3-201ENST00000620418 560 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 AL162373.1-201ENST00000620433 407 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 AL360181.4-201ENST00000621752 134 ntBASIC3.75□□□□□ -1.81
HOXA3O43365 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA3O43365 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
HOXA3O43365 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 149.9 ms